Hb_000224_050

Information

Type -
Description -
Location Contig224: 39150-39572
Sequence    

Annotation

kegg
ID rcu:RCOM_0510840
description hypothetical protein
nr
ID XP_002528941.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSH2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0510840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23284: 14041-48737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_018671_010 0.0711528938 - - -
3 Hb_002186_120 0.0734816057 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
4 Hb_178968_010 0.0753069585 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
5 Hb_003540_010 0.0789435672 - - -
6 Hb_000224_020 0.0852512477 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
7 Hb_000917_220 0.0866988225 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
8 Hb_000053_150 0.0869145823 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
9 Hb_000381_140 0.0908392767 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
10 Hb_000277_040 0.0923742984 - - -
11 Hb_004137_090 0.094200863 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
12 Hb_003216_010 0.0959961985 - - glycosyl hydrolase family protein [Populus trichocarpa]
13 Hb_007292_020 0.0960114641 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
14 Hb_002894_020 0.1013361117 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
15 Hb_000203_120 0.10487876 - - conserved hypothetical protein [Ricinus communis]
16 Hb_122079_010 0.1054107027 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
17 Hb_007290_010 0.1059349137 - - cytochrome P450, putative [Ricinus communis]
18 Hb_008727_090 0.1087006239 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
19 Hb_005057_020 0.109745642 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
20 Hb_003561_020 0.1152016332 - - gulonolactone oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000224_050 Hb_000224_050 Hb_018671_010 Hb_018671_010 Hb_000224_050--Hb_018671_010 Hb_002186_120 Hb_002186_120 Hb_000224_050--Hb_002186_120 Hb_178968_010 Hb_178968_010 Hb_000224_050--Hb_178968_010 Hb_003540_010 Hb_003540_010 Hb_000224_050--Hb_003540_010 Hb_000224_020 Hb_000224_020 Hb_000224_050--Hb_000224_020 Hb_000917_220 Hb_000917_220 Hb_000224_050--Hb_000917_220 Hb_018671_010--Hb_002186_120 Hb_000277_040 Hb_000277_040 Hb_018671_010--Hb_000277_040 Hb_018671_010--Hb_178968_010 Hb_000053_150 Hb_000053_150 Hb_018671_010--Hb_000053_150 Hb_018671_010--Hb_003540_010 Hb_002186_120--Hb_000277_040 Hb_002186_120--Hb_178968_010 Hb_002186_120--Hb_000053_150 Hb_002186_120--Hb_003540_010 Hb_178968_010--Hb_000053_150 Hb_178968_010--Hb_003540_010 Hb_003216_010 Hb_003216_010 Hb_178968_010--Hb_003216_010 Hb_122079_010 Hb_122079_010 Hb_178968_010--Hb_122079_010 Hb_003540_010--Hb_000917_220 Hb_003540_010--Hb_003216_010 Hb_174829_030 Hb_174829_030 Hb_003540_010--Hb_174829_030 Hb_004137_090 Hb_004137_090 Hb_003540_010--Hb_004137_090 Hb_003540_010--Hb_000053_150 Hb_002894_020 Hb_002894_020 Hb_000224_020--Hb_002894_020 Hb_004474_020 Hb_004474_020 Hb_000224_020--Hb_004474_020 Hb_004899_380 Hb_004899_380 Hb_000224_020--Hb_004899_380 Hb_000224_020--Hb_000917_220 Hb_000224_020--Hb_174829_030 Hb_000917_220--Hb_174829_030 Hb_000917_220--Hb_003216_010 Hb_000917_220--Hb_178968_010 Hb_151027_010 Hb_151027_010 Hb_000917_220--Hb_151027_010 Hb_000917_220--Hb_004137_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.04746 2.27439 19.2803 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.197692 0

CAGE analysis