Hb_004342_040

Information

Type -
Description -
Location Contig4342: 49411-53001
Sequence    

Annotation

kegg
ID rcu:RCOM_0799060
description 9-cis-epoxycarotenoid dioxygenase, putative
nr
ID XP_012077565.1
description PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
swissprot
ID C3VEQ4
description Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Oncidium hybrid cultivar GN=CCD1 PE=2 SV=1
trembl
ID B9RRX7
description 9-cis-epoxycarotenoid dioxygenase, putative OS=Ricinus communis GN=RCOM_0799060 PE=4 SV=1
Gene Ontology
ID GO:0051213
description carotenoid (9 )-cleavage dioxygenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42422: 51027-52676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004342_040 0.0 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
2 Hb_005057_020 0.0390721148 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
3 Hb_157881_010 0.0418135984 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_061335_010 0.0530554931 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
5 Hb_000696_120 0.0653320298 - - PREDICTED: protein FD [Populus euphratica]
6 Hb_003216_010 0.0702346537 - - glycosyl hydrolase family protein [Populus trichocarpa]
7 Hb_122079_010 0.0751421533 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
8 Hb_000053_150 0.0848387083 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
9 Hb_001006_080 0.0884716385 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
10 Hb_010080_040 0.0893115756 - - conserved hypothetical protein [Ricinus communis]
11 Hb_178968_010 0.0919259901 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
12 Hb_001976_070 0.0955987016 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
13 Hb_174829_030 0.0985968337 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003878_130 0.1068371747 - - -
15 Hb_003540_010 0.1070111933 - - -
16 Hb_010812_080 0.1148452064 - - PREDICTED: methylesterase 17 [Jatropha curcas]
17 Hb_002534_140 0.1171781907 - - hypothetical protein JCGZ_11629 [Jatropha curcas]
18 Hb_004137_090 0.1182332384 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
19 Hb_004899_380 0.1192807491 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003561_020 0.1194653462 - - gulonolactone oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004342_040 Hb_004342_040 Hb_005057_020 Hb_005057_020 Hb_004342_040--Hb_005057_020 Hb_157881_010 Hb_157881_010 Hb_004342_040--Hb_157881_010 Hb_061335_010 Hb_061335_010 Hb_004342_040--Hb_061335_010 Hb_000696_120 Hb_000696_120 Hb_004342_040--Hb_000696_120 Hb_003216_010 Hb_003216_010 Hb_004342_040--Hb_003216_010 Hb_122079_010 Hb_122079_010 Hb_004342_040--Hb_122079_010 Hb_005057_020--Hb_003216_010 Hb_000053_150 Hb_000053_150 Hb_005057_020--Hb_000053_150 Hb_005057_020--Hb_000696_120 Hb_005057_020--Hb_122079_010 Hb_178968_010 Hb_178968_010 Hb_005057_020--Hb_178968_010 Hb_001976_070 Hb_001976_070 Hb_157881_010--Hb_001976_070 Hb_157881_010--Hb_061335_010 Hb_157881_010--Hb_005057_020 Hb_132880_020 Hb_132880_020 Hb_157881_010--Hb_132880_020 Hb_157881_010--Hb_000696_120 Hb_061335_010--Hb_122079_010 Hb_061335_010--Hb_005057_020 Hb_061335_010--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_061335_010--Hb_010812_080 Hb_174829_030 Hb_174829_030 Hb_000696_120--Hb_174829_030 Hb_001006_080 Hb_001006_080 Hb_000696_120--Hb_001006_080 Hb_000696_120--Hb_003216_010 Hb_010080_040 Hb_010080_040 Hb_000696_120--Hb_010080_040 Hb_003540_010 Hb_003540_010 Hb_003216_010--Hb_003540_010 Hb_003216_010--Hb_174829_030 Hb_003216_010--Hb_178968_010 Hb_000917_220 Hb_000917_220 Hb_003216_010--Hb_000917_220 Hb_122079_010--Hb_000053_150 Hb_122079_010--Hb_010812_080 Hb_122079_010--Hb_178968_010 Hb_000277_040 Hb_000277_040 Hb_122079_010--Hb_000277_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0183727 0.0834825 0.302028 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis