Hb_000696_120

Information

Type -
Description -
Location Contig696: 71787-73572
Sequence    

Annotation

kegg
ID tcc:TCM_000152
description Basic-leucine zipper transcription factor family protein, putative
nr
ID XP_011043136.1
description PREDICTED: protein FD [Populus euphratica]
swissprot
ID Q84JK2
description Protein FD OS=Arabidopsis thaliana GN=FD PE=1 SV=1
trembl
ID A0A061DF98
description Basic-leucine zipper transcription factor family protein, putative OS=Theobroma cacao GN=TCM_000152 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54582: 72335-72601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_120 0.0 - - PREDICTED: protein FD [Populus euphratica]
2 Hb_174829_030 0.0362558751 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001006_080 0.0382452751 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
4 Hb_003216_010 0.0403528547 - - glycosyl hydrolase family protein [Populus trichocarpa]
5 Hb_010080_040 0.0475282437 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005057_020 0.0534655352 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
7 Hb_004342_040 0.0653320298 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
8 Hb_003540_010 0.0711819648 - - -
9 Hb_151027_010 0.0770468681 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
10 Hb_000917_220 0.0845861793 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
11 Hb_003878_130 0.0849688784 - - -
12 Hb_178968_010 0.0873312324 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
13 Hb_104362_020 0.0891619484 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_004899_380 0.0964293035 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003561_020 0.0965172659 - - gulonolactone oxidase, putative [Ricinus communis]
16 Hb_000053_150 0.0978340716 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
17 Hb_157881_010 0.0980437583 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_004137_090 0.1032827797 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
19 Hb_000224_020 0.1051214353 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
20 Hb_122079_010 0.1051786222 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]

Gene co-expression network

sample Hb_000696_120 Hb_000696_120 Hb_174829_030 Hb_174829_030 Hb_000696_120--Hb_174829_030 Hb_001006_080 Hb_001006_080 Hb_000696_120--Hb_001006_080 Hb_003216_010 Hb_003216_010 Hb_000696_120--Hb_003216_010 Hb_010080_040 Hb_010080_040 Hb_000696_120--Hb_010080_040 Hb_005057_020 Hb_005057_020 Hb_000696_120--Hb_005057_020 Hb_004342_040 Hb_004342_040 Hb_000696_120--Hb_004342_040 Hb_174829_030--Hb_003216_010 Hb_151027_010 Hb_151027_010 Hb_174829_030--Hb_151027_010 Hb_174829_030--Hb_010080_040 Hb_174829_030--Hb_001006_080 Hb_003540_010 Hb_003540_010 Hb_174829_030--Hb_003540_010 Hb_003878_130 Hb_003878_130 Hb_001006_080--Hb_003878_130 Hb_001006_080--Hb_010080_040 Hb_001006_080--Hb_151027_010 Hb_104362_020 Hb_104362_020 Hb_001006_080--Hb_104362_020 Hb_003216_010--Hb_005057_020 Hb_003216_010--Hb_003540_010 Hb_178968_010 Hb_178968_010 Hb_003216_010--Hb_178968_010 Hb_000917_220 Hb_000917_220 Hb_003216_010--Hb_000917_220 Hb_010080_040--Hb_003216_010 Hb_003561_020 Hb_003561_020 Hb_010080_040--Hb_003561_020 Hb_010080_040--Hb_005057_020 Hb_005057_020--Hb_004342_040 Hb_000053_150 Hb_000053_150 Hb_005057_020--Hb_000053_150 Hb_122079_010 Hb_122079_010 Hb_005057_020--Hb_122079_010 Hb_005057_020--Hb_178968_010 Hb_157881_010 Hb_157881_010 Hb_004342_040--Hb_157881_010 Hb_061335_010 Hb_061335_010 Hb_004342_040--Hb_061335_010 Hb_004342_040--Hb_003216_010 Hb_004342_040--Hb_122079_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.216747 0.478011 2.09774 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis