Hb_001488_120

Information

Type -
Description -
Location Contig1488: 80256-80603
Sequence    

Annotation

kegg
ID rcu:RCOM_0525880
description hypothetical protein
nr
ID KDP27231.1
description hypothetical protein JCGZ_19930 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 046_C15.ab1: 80161-80653

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_120 0.0 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
2 Hb_000009_100 0.1033272144 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
3 Hb_132880_020 0.1077630066 - - hypothetical protein VITISV_026364 [Vitis vinifera]
4 Hb_001152_040 0.1160496793 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]
5 Hb_013394_110 0.1210319004 - - zinc finger protein, putative [Ricinus communis]
6 Hb_001976_070 0.1356642876 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
7 Hb_157881_010 0.1360646277 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_002471_030 0.1418021162 - - PREDICTED: cyclin-J18 [Jatropha curcas]
9 Hb_014223_030 0.1418030323 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Jatropha curcas]
10 Hb_088508_010 0.1418078619 - - cytochrome P450, putative [Ricinus communis]
11 Hb_014776_010 0.1418136535 - - PREDICTED: receptor-like protein kinase 5 [Jatropha curcas]
12 Hb_007138_020 0.1418287683 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]
13 Hb_000018_080 0.1418313834 - - hypothetical protein JCGZ_07748 [Jatropha curcas]
14 Hb_001414_070 0.1418322825 - - Zinc finger protein GIS2 [Medicago truncatula]
15 Hb_007292_040 0.141889475 - - Plastid developmental protein DAG [Theobroma cacao]
16 Hb_000762_100 0.1419050381 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
17 Hb_001140_120 0.1419167723 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
18 Hb_001098_060 0.1419535436 - - -
19 Hb_000245_010 0.142041816 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
20 Hb_003203_010 0.1420961153 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]

Gene co-expression network

sample Hb_001488_120 Hb_001488_120 Hb_000009_100 Hb_000009_100 Hb_001488_120--Hb_000009_100 Hb_132880_020 Hb_132880_020 Hb_001488_120--Hb_132880_020 Hb_001152_040 Hb_001152_040 Hb_001488_120--Hb_001152_040 Hb_013394_110 Hb_013394_110 Hb_001488_120--Hb_013394_110 Hb_001976_070 Hb_001976_070 Hb_001488_120--Hb_001976_070 Hb_157881_010 Hb_157881_010 Hb_001488_120--Hb_157881_010 Hb_000009_100--Hb_001152_040 Hb_000009_100--Hb_132880_020 Hb_000009_100--Hb_013394_110 Hb_064194_010 Hb_064194_010 Hb_000009_100--Hb_064194_010 Hb_000009_100--Hb_001976_070 Hb_132880_020--Hb_001152_040 Hb_132880_020--Hb_001976_070 Hb_179367_020 Hb_179367_020 Hb_132880_020--Hb_179367_020 Hb_000908_030 Hb_000908_030 Hb_132880_020--Hb_000908_030 Hb_132880_020--Hb_157881_010 Hb_001152_040--Hb_064194_010 Hb_177179_020 Hb_177179_020 Hb_001152_040--Hb_177179_020 Hb_001152_040--Hb_179367_020 Hb_001152_040--Hb_001976_070 Hb_005858_010 Hb_005858_010 Hb_013394_110--Hb_005858_010 Hb_012758_020 Hb_012758_020 Hb_013394_110--Hb_012758_020 Hb_000245_010 Hb_000245_010 Hb_013394_110--Hb_000245_010 Hb_002383_010 Hb_002383_010 Hb_013394_110--Hb_002383_010 Hb_000005_150 Hb_000005_150 Hb_013394_110--Hb_000005_150 Hb_001414_070 Hb_001414_070 Hb_013394_110--Hb_001414_070 Hb_001976_070--Hb_179367_020 Hb_001976_070--Hb_000908_030 Hb_001976_070--Hb_157881_010 Hb_003878_130 Hb_003878_130 Hb_001976_070--Hb_003878_130 Hb_004342_040 Hb_004342_040 Hb_157881_010--Hb_004342_040 Hb_061335_010 Hb_061335_010 Hb_157881_010--Hb_061335_010 Hb_005057_020 Hb_005057_020 Hb_157881_010--Hb_005057_020 Hb_000696_120 Hb_000696_120 Hb_157881_010--Hb_000696_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.242568 3.93573 7.40865 0.225654 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis