Hb_000005_150

Information

Type -
Description -
Location Contig5: 172315-180768
Sequence    

Annotation

kegg
ID rcu:RCOM_0474910
description monovalent cation:proton antiporter, putative
nr
ID XP_012064686.1
description PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]
swissprot
ID Q9FFB8
description Cation/H(+) antiporter 3 OS=Arabidopsis thaliana GN=CHX3 PE=2 SV=1
trembl
ID B9SCK6
description Monovalent cation:proton antiporter, putative OS=Ricinus communis GN=RCOM_0474910 PE=4 SV=1
Gene Ontology
ID GO:0015672
description cation h(+) antiporter 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45688: 176379-176824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_150 0.0 - - PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]
2 Hb_077165_010 0.0008660592 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002383_010 0.0010218926 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_012758_020 0.0053463234 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_005858_010 0.0072720572 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
6 Hb_011515_020 0.0076407263 - - PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]
7 Hb_001021_190 0.0103118765 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_003784_030 0.0131428231 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000245_010 0.0138316961 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
10 Hb_001414_070 0.019208318 - - Zinc finger protein GIS2 [Medicago truncatula]
11 Hb_007138_020 0.0193856687 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]
12 Hb_014776_010 0.0203348239 - - PREDICTED: receptor-like protein kinase 5 [Jatropha curcas]
13 Hb_088508_010 0.020871506 - - cytochrome P450, putative [Ricinus communis]
14 Hb_168451_010 0.021119304 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
15 Hb_053224_010 0.0214430737 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
16 Hb_014223_030 0.0216406757 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Jatropha curcas]
17 Hb_002471_030 0.0220676919 - - PREDICTED: cyclin-J18 [Jatropha curcas]
18 Hb_000018_080 0.0250762126 - - hypothetical protein JCGZ_07748 [Jatropha curcas]
19 Hb_032907_020 0.0266702667 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_007292_040 0.0271935115 - - Plastid developmental protein DAG [Theobroma cacao]

Gene co-expression network

sample Hb_000005_150 Hb_000005_150 Hb_077165_010 Hb_077165_010 Hb_000005_150--Hb_077165_010 Hb_002383_010 Hb_002383_010 Hb_000005_150--Hb_002383_010 Hb_012758_020 Hb_012758_020 Hb_000005_150--Hb_012758_020 Hb_005858_010 Hb_005858_010 Hb_000005_150--Hb_005858_010 Hb_011515_020 Hb_011515_020 Hb_000005_150--Hb_011515_020 Hb_001021_190 Hb_001021_190 Hb_000005_150--Hb_001021_190 Hb_077165_010--Hb_002383_010 Hb_077165_010--Hb_012758_020 Hb_077165_010--Hb_011515_020 Hb_077165_010--Hb_005858_010 Hb_077165_010--Hb_001021_190 Hb_002383_010--Hb_012758_020 Hb_002383_010--Hb_005858_010 Hb_002383_010--Hb_011515_020 Hb_002383_010--Hb_001021_190 Hb_012758_020--Hb_005858_010 Hb_000245_010 Hb_000245_010 Hb_012758_020--Hb_000245_010 Hb_012758_020--Hb_011515_020 Hb_005858_010--Hb_000245_010 Hb_001414_070 Hb_001414_070 Hb_005858_010--Hb_001414_070 Hb_011515_020--Hb_001021_190 Hb_003784_030 Hb_003784_030 Hb_011515_020--Hb_003784_030 Hb_001021_190--Hb_003784_030 Hb_168451_010 Hb_168451_010 Hb_001021_190--Hb_168451_010 Hb_053224_010 Hb_053224_010 Hb_001021_190--Hb_053224_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0315002 0.0531835 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis