Hb_001021_190

Information

Type -
Description -
Location Contig1021: 223339-225913
Sequence    

Annotation

kegg
ID rcu:RCOM_1035000
description receptor protein kinase, putative (EC:2.7.11.30 1.3.1.74)
nr
ID XP_012068364.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067KYY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15779 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_190 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
2 Hb_011515_020 0.0026712322 - - PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]
3 Hb_003784_030 0.0028310956 - - conserved hypothetical protein [Ricinus communis]
4 Hb_077165_010 0.0094458503 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000005_150 0.0103118765 - - PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]
6 Hb_168451_010 0.0108083363 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
7 Hb_053224_010 0.0111321473 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
8 Hb_002383_010 0.0113337222 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
9 Hb_012758_020 0.01565786 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
10 Hb_032907_020 0.0163601204 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_000295_140 0.0171891878 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
12 Hb_005858_010 0.0175834138 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
13 Hb_086720_010 0.0197293851 - - CTV.19 [Citrus trifoliata]
14 Hb_007407_020 0.0207882715 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000245_010 0.0241422079 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
16 Hb_138485_010 0.0285945016 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
17 Hb_001414_070 0.0295178676 - - Zinc finger protein GIS2 [Medicago truncatula]
18 Hb_007138_020 0.0296951823 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]
19 Hb_014776_010 0.0306441406 - - PREDICTED: receptor-like protein kinase 5 [Jatropha curcas]
20 Hb_088508_010 0.031180708 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_001021_190 Hb_001021_190 Hb_011515_020 Hb_011515_020 Hb_001021_190--Hb_011515_020 Hb_003784_030 Hb_003784_030 Hb_001021_190--Hb_003784_030 Hb_077165_010 Hb_077165_010 Hb_001021_190--Hb_077165_010 Hb_000005_150 Hb_000005_150 Hb_001021_190--Hb_000005_150 Hb_168451_010 Hb_168451_010 Hb_001021_190--Hb_168451_010 Hb_053224_010 Hb_053224_010 Hb_001021_190--Hb_053224_010 Hb_011515_020--Hb_003784_030 Hb_011515_020--Hb_077165_010 Hb_011515_020--Hb_000005_150 Hb_002383_010 Hb_002383_010 Hb_011515_020--Hb_002383_010 Hb_012758_020 Hb_012758_020 Hb_011515_020--Hb_012758_020 Hb_003784_030--Hb_168451_010 Hb_003784_030--Hb_053224_010 Hb_003784_030--Hb_077165_010 Hb_003784_030--Hb_000005_150 Hb_077165_010--Hb_000005_150 Hb_077165_010--Hb_002383_010 Hb_077165_010--Hb_012758_020 Hb_005858_010 Hb_005858_010 Hb_077165_010--Hb_005858_010 Hb_000005_150--Hb_002383_010 Hb_000005_150--Hb_012758_020 Hb_000005_150--Hb_005858_010 Hb_168451_010--Hb_053224_010 Hb_032907_020 Hb_032907_020 Hb_168451_010--Hb_032907_020 Hb_000295_140 Hb_000295_140 Hb_168451_010--Hb_000295_140 Hb_086720_010 Hb_086720_010 Hb_168451_010--Hb_086720_010 Hb_007407_020 Hb_007407_020 Hb_168451_010--Hb_007407_020 Hb_053224_010--Hb_032907_020 Hb_053224_010--Hb_000295_140 Hb_053224_010--Hb_086720_010 Hb_053224_010--Hb_007407_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0206085 0.0330947 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis