Hb_032907_020

Information

Type -
Description -
Location Contig32907: 15025-15381
Sequence    

Annotation

kegg
ID rcu:RCOM_0886480
description calmodulin binding protein, putative
nr
ID XP_002522669.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID F4I1I4
description Auxin-responsive protein SAUR67 OS=Arabidopsis thaliana GN=SAUR67 PE=2 SV=1
trembl
ID B9S9K0
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0886480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032907_020 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_000295_140 0.0008291554 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
3 Hb_086720_010 0.0033696747 - - CTV.19 [Citrus trifoliata]
4 Hb_007407_020 0.0044287185 - - ATP binding protein, putative [Ricinus communis]
5 Hb_053224_010 0.005228334 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
6 Hb_168451_010 0.0055521564 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
7 Hb_138485_010 0.0122365271 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
8 Hb_003784_030 0.0135292637 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001021_190 0.0163601204 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
10 Hb_011515_020 0.0190310345 - - PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]
11 Hb_008887_060 0.0216746534 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
12 Hb_077165_010 0.0258044382 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000005_150 0.0266702667 - - PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]
14 Hb_004117_220 0.0276188556 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
15 Hb_002383_010 0.0276918668 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_000378_020 0.0278613472 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
17 Hb_000123_080 0.0289312742 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
18 Hb_013405_170 0.0295806292 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
19 Hb_005743_040 0.0304425494 - - JHL22C18.10 [Jatropha curcas]
20 Hb_012758_020 0.0320148149 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_032907_020 Hb_032907_020 Hb_000295_140 Hb_000295_140 Hb_032907_020--Hb_000295_140 Hb_086720_010 Hb_086720_010 Hb_032907_020--Hb_086720_010 Hb_007407_020 Hb_007407_020 Hb_032907_020--Hb_007407_020 Hb_053224_010 Hb_053224_010 Hb_032907_020--Hb_053224_010 Hb_168451_010 Hb_168451_010 Hb_032907_020--Hb_168451_010 Hb_138485_010 Hb_138485_010 Hb_032907_020--Hb_138485_010 Hb_000295_140--Hb_086720_010 Hb_000295_140--Hb_007407_020 Hb_000295_140--Hb_053224_010 Hb_000295_140--Hb_168451_010 Hb_000295_140--Hb_138485_010 Hb_086720_010--Hb_007407_020 Hb_086720_010--Hb_053224_010 Hb_086720_010--Hb_138485_010 Hb_086720_010--Hb_168451_010 Hb_007407_020--Hb_138485_010 Hb_007407_020--Hb_053224_010 Hb_007407_020--Hb_168451_010 Hb_053224_010--Hb_168451_010 Hb_003784_030 Hb_003784_030 Hb_053224_010--Hb_003784_030 Hb_168451_010--Hb_003784_030 Hb_008887_060 Hb_008887_060 Hb_138485_010--Hb_008887_060 Hb_004117_220 Hb_004117_220 Hb_138485_010--Hb_004117_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.168149 0.249545 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis