Hb_008887_060

Information

Type -
Description -
Location Contig8887: 73173-74338
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09630g
description hypothetical protein
nr
ID XP_012079710.1
description PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID A0A067K9B1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14833 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008887_060 0.0 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
2 Hb_004117_220 0.0059454979 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
3 Hb_000378_020 0.0061880541 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
4 Hb_000123_080 0.0072582767 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
5 Hb_013405_170 0.0079078198 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
6 Hb_005743_040 0.0087699997 - - JHL22C18.10 [Jatropha curcas]
7 Hb_138485_010 0.0094390448 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
8 Hb_021281_010 0.0134052892 - - Major latex protein, putative [Ricinus communis]
9 Hb_001882_120 0.0144460968 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
10 Hb_007407_020 0.0172465448 - - ATP binding protein, putative [Ricinus communis]
11 Hb_086720_010 0.0183054716 - - CTV.19 [Citrus trifoliata]
12 Hb_000101_110 0.0205128968 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
13 Hb_000295_140 0.0208456362 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
14 Hb_032907_020 0.0216746534 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_043777_010 0.0230109347 - - conserved hypothetical protein [Ricinus communis]
16 Hb_053224_010 0.0269018583 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
17 Hb_168451_010 0.027225596 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
18 Hb_003891_020 0.0281815097 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
19 Hb_001279_060 0.0287009275 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
20 Hb_002759_210 0.0351741956 - - Peroxidase 6 precursor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_008887_060 Hb_008887_060 Hb_004117_220 Hb_004117_220 Hb_008887_060--Hb_004117_220 Hb_000378_020 Hb_000378_020 Hb_008887_060--Hb_000378_020 Hb_000123_080 Hb_000123_080 Hb_008887_060--Hb_000123_080 Hb_013405_170 Hb_013405_170 Hb_008887_060--Hb_013405_170 Hb_005743_040 Hb_005743_040 Hb_008887_060--Hb_005743_040 Hb_138485_010 Hb_138485_010 Hb_008887_060--Hb_138485_010 Hb_004117_220--Hb_000378_020 Hb_004117_220--Hb_000123_080 Hb_004117_220--Hb_013405_170 Hb_004117_220--Hb_005743_040 Hb_021281_010 Hb_021281_010 Hb_004117_220--Hb_021281_010 Hb_000378_020--Hb_000123_080 Hb_000378_020--Hb_013405_170 Hb_000378_020--Hb_005743_040 Hb_000378_020--Hb_021281_010 Hb_000123_080--Hb_013405_170 Hb_000123_080--Hb_005743_040 Hb_000123_080--Hb_021281_010 Hb_001882_120 Hb_001882_120 Hb_000123_080--Hb_001882_120 Hb_013405_170--Hb_005743_040 Hb_013405_170--Hb_021281_010 Hb_013405_170--Hb_001882_120 Hb_005743_040--Hb_021281_010 Hb_005743_040--Hb_001882_120 Hb_007407_020 Hb_007407_020 Hb_138485_010--Hb_007407_020 Hb_086720_010 Hb_086720_010 Hb_138485_010--Hb_086720_010 Hb_000295_140 Hb_000295_140 Hb_138485_010--Hb_000295_140 Hb_032907_020 Hb_032907_020 Hb_138485_010--Hb_032907_020 Hb_138485_010--Hb_004117_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0346943 0.0464215 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis