Hb_005743_040

Information

Type -
Description -
Location Contig5743: 21241-24552
Sequence    

Annotation

kegg
ID -
description -
nr
ID BAJ53217.1
description JHL22C18.10 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NUA7
description JHL22C18.10 protein OS=Jatropha curcas GN=JHL22C18.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005743_040 0.0 - - JHL22C18.10 [Jatropha curcas]
2 Hb_013405_170 0.0008622013 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
3 Hb_000123_080 0.0015117575 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
4 Hb_000378_020 0.002581996 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
5 Hb_004117_220 0.0028245547 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
6 Hb_021281_010 0.0046354845 - - Major latex protein, putative [Ricinus communis]
7 Hb_001882_120 0.0056763544 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
8 Hb_008887_060 0.0087699997 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
9 Hb_000101_110 0.0117436513 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
10 Hb_043777_010 0.0142419601 - - conserved hypothetical protein [Ricinus communis]
11 Hb_138485_010 0.0182084996 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
12 Hb_003891_020 0.0194132181 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
13 Hb_001279_060 0.0199327136 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
14 Hb_007407_020 0.026015117 - - ATP binding protein, putative [Ricinus communis]
15 Hb_002759_210 0.0264070888 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
16 Hb_086720_010 0.0270738937 - - CTV.19 [Citrus trifoliata]
17 Hb_000012_360 0.028238406 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
18 Hb_000272_060 0.0291604217 - - unnamed protein product [Vitis vinifera]
19 Hb_000295_140 0.0296136685 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
20 Hb_002490_070 0.0300529641 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_005743_040 Hb_005743_040 Hb_013405_170 Hb_013405_170 Hb_005743_040--Hb_013405_170 Hb_000123_080 Hb_000123_080 Hb_005743_040--Hb_000123_080 Hb_000378_020 Hb_000378_020 Hb_005743_040--Hb_000378_020 Hb_004117_220 Hb_004117_220 Hb_005743_040--Hb_004117_220 Hb_021281_010 Hb_021281_010 Hb_005743_040--Hb_021281_010 Hb_001882_120 Hb_001882_120 Hb_005743_040--Hb_001882_120 Hb_013405_170--Hb_000123_080 Hb_013405_170--Hb_000378_020 Hb_013405_170--Hb_004117_220 Hb_013405_170--Hb_021281_010 Hb_013405_170--Hb_001882_120 Hb_000123_080--Hb_000378_020 Hb_000123_080--Hb_004117_220 Hb_000123_080--Hb_021281_010 Hb_000123_080--Hb_001882_120 Hb_000378_020--Hb_004117_220 Hb_008887_060 Hb_008887_060 Hb_000378_020--Hb_008887_060 Hb_000378_020--Hb_021281_010 Hb_004117_220--Hb_008887_060 Hb_004117_220--Hb_021281_010 Hb_021281_010--Hb_001882_120 Hb_000101_110 Hb_000101_110 Hb_021281_010--Hb_000101_110 Hb_001882_120--Hb_000101_110 Hb_001882_120--Hb_000378_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0251897 0.0323282 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis