Hb_000101_110

Information

Type -
Description -
Location Contig101: 159432-160361
Sequence    

Annotation

kegg
ID rcu:RCOM_0592550
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012091048.1
description PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID A0A067LC70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01308 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lrr receptor-like serine threonine-protein kinase efr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_110 0.0 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
2 Hb_043777_010 0.0024984568 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001882_120 0.0060674405 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
4 Hb_021281_010 0.0071083043 - - Major latex protein, putative [Ricinus communis]
5 Hb_003891_020 0.007670185 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
6 Hb_001279_060 0.00818974 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
7 Hb_005743_040 0.0117436513 - - JHL22C18.10 [Jatropha curcas]
8 Hb_013405_170 0.0126058072 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
9 Hb_000123_080 0.0132553251 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
10 Hb_000378_020 0.0143254926 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
11 Hb_004117_220 0.0145680339 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
12 Hb_002759_210 0.0146650419 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
13 Hb_000012_360 0.0164966837 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
14 Hb_000272_060 0.0174188732 - - unnamed protein product [Vitis vinifera]
15 Hb_002490_070 0.0183115904 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
16 Hb_003529_020 0.0194944644 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
17 Hb_008887_060 0.0205128968 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
18 Hb_045150_010 0.0223571309 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
19 Hb_001504_250 0.0277498481 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_001456_010 0.0291457898 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000101_110 Hb_000101_110 Hb_043777_010 Hb_043777_010 Hb_000101_110--Hb_043777_010 Hb_001882_120 Hb_001882_120 Hb_000101_110--Hb_001882_120 Hb_021281_010 Hb_021281_010 Hb_000101_110--Hb_021281_010 Hb_003891_020 Hb_003891_020 Hb_000101_110--Hb_003891_020 Hb_001279_060 Hb_001279_060 Hb_000101_110--Hb_001279_060 Hb_005743_040 Hb_005743_040 Hb_000101_110--Hb_005743_040 Hb_043777_010--Hb_003891_020 Hb_043777_010--Hb_001279_060 Hb_043777_010--Hb_001882_120 Hb_043777_010--Hb_021281_010 Hb_002759_210 Hb_002759_210 Hb_043777_010--Hb_002759_210 Hb_001882_120--Hb_021281_010 Hb_001882_120--Hb_005743_040 Hb_013405_170 Hb_013405_170 Hb_001882_120--Hb_013405_170 Hb_000123_080 Hb_000123_080 Hb_001882_120--Hb_000123_080 Hb_000378_020 Hb_000378_020 Hb_001882_120--Hb_000378_020 Hb_021281_010--Hb_005743_040 Hb_021281_010--Hb_013405_170 Hb_021281_010--Hb_000123_080 Hb_021281_010--Hb_000378_020 Hb_003891_020--Hb_001279_060 Hb_003891_020--Hb_002759_210 Hb_000012_360 Hb_000012_360 Hb_003891_020--Hb_000012_360 Hb_000272_060 Hb_000272_060 Hb_003891_020--Hb_000272_060 Hb_001279_060--Hb_002759_210 Hb_001279_060--Hb_000012_360 Hb_001279_060--Hb_000272_060 Hb_005743_040--Hb_013405_170 Hb_005743_040--Hb_000123_080 Hb_005743_040--Hb_000378_020 Hb_004117_220 Hb_004117_220 Hb_005743_040--Hb_004117_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.131321 0.159413 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis