Hb_001882_120

Information

Type -
Description -
Location Contig1882: 116591-123960
Sequence    

Annotation

kegg
ID pmum:103335865
description putative ribonuclease H protein At1g65750
nr
ID XP_008237121.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID M5WID7
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024472mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001882_120 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
2 Hb_021281_010 0.0010408797 - - Major latex protein, putative [Ricinus communis]
3 Hb_005743_040 0.0056763544 - - JHL22C18.10 [Jatropha curcas]
4 Hb_000101_110 0.0060674405 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
5 Hb_013405_170 0.0065385444 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
6 Hb_000123_080 0.00718809 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
7 Hb_000378_020 0.0082583072 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
8 Hb_004117_220 0.0085008605 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
9 Hb_043777_010 0.0085658514 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003891_020 0.0137373999 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
11 Hb_001279_060 0.0142569305 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
12 Hb_008887_060 0.0144460968 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
13 Hb_002759_210 0.0207318327 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
14 Hb_000012_360 0.0225633292 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
15 Hb_000272_060 0.0234854401 - - unnamed protein product [Vitis vinifera]
16 Hb_138485_010 0.0238839673 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
17 Hb_002490_070 0.0243780779 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
18 Hb_003529_020 0.0255608414 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
19 Hb_045150_010 0.0284232162 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
20 Hb_007407_020 0.0316897848 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001882_120 Hb_001882_120 Hb_021281_010 Hb_021281_010 Hb_001882_120--Hb_021281_010 Hb_005743_040 Hb_005743_040 Hb_001882_120--Hb_005743_040 Hb_000101_110 Hb_000101_110 Hb_001882_120--Hb_000101_110 Hb_013405_170 Hb_013405_170 Hb_001882_120--Hb_013405_170 Hb_000123_080 Hb_000123_080 Hb_001882_120--Hb_000123_080 Hb_000378_020 Hb_000378_020 Hb_001882_120--Hb_000378_020 Hb_021281_010--Hb_005743_040 Hb_021281_010--Hb_013405_170 Hb_021281_010--Hb_000123_080 Hb_021281_010--Hb_000101_110 Hb_021281_010--Hb_000378_020 Hb_005743_040--Hb_013405_170 Hb_005743_040--Hb_000123_080 Hb_005743_040--Hb_000378_020 Hb_004117_220 Hb_004117_220 Hb_005743_040--Hb_004117_220 Hb_043777_010 Hb_043777_010 Hb_000101_110--Hb_043777_010 Hb_003891_020 Hb_003891_020 Hb_000101_110--Hb_003891_020 Hb_001279_060 Hb_001279_060 Hb_000101_110--Hb_001279_060 Hb_000101_110--Hb_005743_040 Hb_013405_170--Hb_000123_080 Hb_013405_170--Hb_000378_020 Hb_013405_170--Hb_004117_220 Hb_000123_080--Hb_000378_020 Hb_000123_080--Hb_004117_220 Hb_000378_020--Hb_004117_220 Hb_008887_060 Hb_008887_060 Hb_000378_020--Hb_008887_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0261202 0.032632 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis