Hb_004117_220

Information

Type -
Description -
Location Contig4117: 144715-145182
Sequence    

Annotation

kegg
ID mdm:103427643
description non-specific lipid-transfer protein 3-like
nr
ID XP_012091057.1
description PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
swissprot
ID Q43019
description Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1
trembl
ID A0A067JQQ4
description Non-specific lipid-transfer protein OS=Jatropha curcas GN=JCGZ_00661 PE=3 SV=1
Gene Ontology
ID GO:0006810
description non-specific lipid-transfer protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40770: 144470-145218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_220 0.0 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
2 Hb_000378_020 0.0002425594 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
3 Hb_000123_080 0.0013127992 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
4 Hb_013405_170 0.0019623551 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
5 Hb_005743_040 0.0028245547 - - JHL22C18.10 [Jatropha curcas]
6 Hb_008887_060 0.0059454979 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
7 Hb_021281_010 0.0074600043 - - Major latex protein, putative [Ricinus communis]
8 Hb_001882_120 0.0085008605 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
9 Hb_000101_110 0.0145680339 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
10 Hb_138485_010 0.0153842302 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
11 Hb_043777_010 0.0170662705 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003891_020 0.0222373396 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
13 Hb_001279_060 0.0227568132 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
14 Hb_007407_020 0.0231911789 - - ATP binding protein, putative [Ricinus communis]
15 Hb_086720_010 0.0242500102 - - CTV.19 [Citrus trifoliata]
16 Hb_000295_140 0.0267899259 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
17 Hb_032907_020 0.0276188556 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_002759_210 0.0292308707 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
19 Hb_000012_360 0.0310620832 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
20 Hb_000272_060 0.0319840436 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_004117_220 Hb_004117_220 Hb_000378_020 Hb_000378_020 Hb_004117_220--Hb_000378_020 Hb_000123_080 Hb_000123_080 Hb_004117_220--Hb_000123_080 Hb_013405_170 Hb_013405_170 Hb_004117_220--Hb_013405_170 Hb_005743_040 Hb_005743_040 Hb_004117_220--Hb_005743_040 Hb_008887_060 Hb_008887_060 Hb_004117_220--Hb_008887_060 Hb_021281_010 Hb_021281_010 Hb_004117_220--Hb_021281_010 Hb_000378_020--Hb_000123_080 Hb_000378_020--Hb_013405_170 Hb_000378_020--Hb_005743_040 Hb_000378_020--Hb_008887_060 Hb_000378_020--Hb_021281_010 Hb_000123_080--Hb_013405_170 Hb_000123_080--Hb_005743_040 Hb_000123_080--Hb_021281_010 Hb_001882_120 Hb_001882_120 Hb_000123_080--Hb_001882_120 Hb_013405_170--Hb_005743_040 Hb_013405_170--Hb_021281_010 Hb_013405_170--Hb_001882_120 Hb_005743_040--Hb_021281_010 Hb_005743_040--Hb_001882_120 Hb_008887_060--Hb_000123_080 Hb_008887_060--Hb_013405_170 Hb_008887_060--Hb_005743_040 Hb_138485_010 Hb_138485_010 Hb_008887_060--Hb_138485_010 Hb_021281_010--Hb_001882_120 Hb_000101_110 Hb_000101_110 Hb_021281_010--Hb_000101_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 38.3781 49.9191 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis