Hb_138485_010

Information

Type -
Description -
Location Contig138485: 2-622
Sequence    

Annotation

kegg
ID pop:POPTR_0011s02020g
description POPTRDRAFT_568133; hypothetical protein
nr
ID XP_011012828.1
description PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9HZF1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s02020g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138485_010 0.0 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
2 Hb_007407_020 0.0078079653 - - ATP binding protein, putative [Ricinus communis]
3 Hb_086720_010 0.0088669879 - - CTV.19 [Citrus trifoliata]
4 Hb_008887_060 0.0094390448 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
5 Hb_000295_140 0.0114074146 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
6 Hb_032907_020 0.0122365271 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_004117_220 0.0153842302 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
8 Hb_000378_020 0.0156267685 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
9 Hb_000123_080 0.0166969077 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
10 Hb_013405_170 0.0173463964 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
11 Hb_053224_010 0.017464445 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
12 Hb_168451_010 0.0177882333 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
13 Hb_005743_040 0.0182084996 - - JHL22C18.10 [Jatropha curcas]
14 Hb_021281_010 0.0228432912 - - Major latex protein, putative [Ricinus communis]
15 Hb_001882_120 0.0238839673 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
16 Hb_003784_030 0.0257641946 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001021_190 0.0285945016 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
18 Hb_000101_110 0.0299498561 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_011515_020 0.0312648277 - - PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]
20 Hb_043777_010 0.0324474476 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_138485_010 Hb_138485_010 Hb_007407_020 Hb_007407_020 Hb_138485_010--Hb_007407_020 Hb_086720_010 Hb_086720_010 Hb_138485_010--Hb_086720_010 Hb_008887_060 Hb_008887_060 Hb_138485_010--Hb_008887_060 Hb_000295_140 Hb_000295_140 Hb_138485_010--Hb_000295_140 Hb_032907_020 Hb_032907_020 Hb_138485_010--Hb_032907_020 Hb_004117_220 Hb_004117_220 Hb_138485_010--Hb_004117_220 Hb_007407_020--Hb_086720_010 Hb_007407_020--Hb_000295_140 Hb_007407_020--Hb_032907_020 Hb_053224_010 Hb_053224_010 Hb_007407_020--Hb_053224_010 Hb_168451_010 Hb_168451_010 Hb_007407_020--Hb_168451_010 Hb_086720_010--Hb_000295_140 Hb_086720_010--Hb_032907_020 Hb_086720_010--Hb_053224_010 Hb_086720_010--Hb_168451_010 Hb_008887_060--Hb_004117_220 Hb_000378_020 Hb_000378_020 Hb_008887_060--Hb_000378_020 Hb_000123_080 Hb_000123_080 Hb_008887_060--Hb_000123_080 Hb_013405_170 Hb_013405_170 Hb_008887_060--Hb_013405_170 Hb_005743_040 Hb_005743_040 Hb_008887_060--Hb_005743_040 Hb_000295_140--Hb_032907_020 Hb_000295_140--Hb_053224_010 Hb_000295_140--Hb_168451_010 Hb_032907_020--Hb_053224_010 Hb_032907_020--Hb_168451_010 Hb_004117_220--Hb_000378_020 Hb_004117_220--Hb_000123_080 Hb_004117_220--Hb_013405_170 Hb_004117_220--Hb_005743_040 Hb_021281_010 Hb_021281_010 Hb_004117_220--Hb_021281_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0314602 0.0440319 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis