Hb_168451_010

Information

Type -
Description -
Location Contig168451: 95-761
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07700g
description POPTRDRAFT_833417; acid phosphatase class B family protein
nr
ID XP_011041430.1
description PREDICTED: acid phosphatase 1-like [Populus euphratica]
swissprot
ID P15490
description Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1
trembl
ID B9HST4
description Acid phosphatase class B family protein OS=Populus trichocarpa GN=POPTR_0010s07700g PE=4 SV=1
Gene Ontology
ID GO:0003993
description acid phosphatase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168451_010 0.0 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
2 Hb_053224_010 0.0003238259 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
3 Hb_032907_020 0.0055521564 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_000295_140 0.0063813008 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
5 Hb_003784_030 0.0079773341 - - conserved hypothetical protein [Ricinus communis]
6 Hb_086720_010 0.0089217685 - - CTV.19 [Citrus trifoliata]
7 Hb_007407_020 0.009980783 - - ATP binding protein, putative [Ricinus communis]
8 Hb_001021_190 0.0108083363 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
9 Hb_011515_020 0.013479419 - - PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]
10 Hb_138485_010 0.0177882333 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
11 Hb_077165_010 0.0202533888 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000005_150 0.021119304 - - PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]
13 Hb_002383_010 0.0221410107 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
14 Hb_012758_020 0.0264644606 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
15 Hb_008887_060 0.027225596 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
16 Hb_005858_010 0.0283896563 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
17 Hb_004117_220 0.033169134 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
18 Hb_000378_020 0.0334115955 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
19 Hb_000123_080 0.034481387 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
20 Hb_000245_010 0.0349469883 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]

Gene co-expression network

sample Hb_168451_010 Hb_168451_010 Hb_053224_010 Hb_053224_010 Hb_168451_010--Hb_053224_010 Hb_032907_020 Hb_032907_020 Hb_168451_010--Hb_032907_020 Hb_000295_140 Hb_000295_140 Hb_168451_010--Hb_000295_140 Hb_003784_030 Hb_003784_030 Hb_168451_010--Hb_003784_030 Hb_086720_010 Hb_086720_010 Hb_168451_010--Hb_086720_010 Hb_007407_020 Hb_007407_020 Hb_168451_010--Hb_007407_020 Hb_053224_010--Hb_032907_020 Hb_053224_010--Hb_000295_140 Hb_053224_010--Hb_003784_030 Hb_053224_010--Hb_086720_010 Hb_053224_010--Hb_007407_020 Hb_032907_020--Hb_000295_140 Hb_032907_020--Hb_086720_010 Hb_032907_020--Hb_007407_020 Hb_138485_010 Hb_138485_010 Hb_032907_020--Hb_138485_010 Hb_000295_140--Hb_086720_010 Hb_000295_140--Hb_007407_020 Hb_000295_140--Hb_138485_010 Hb_001021_190 Hb_001021_190 Hb_003784_030--Hb_001021_190 Hb_011515_020 Hb_011515_020 Hb_003784_030--Hb_011515_020 Hb_077165_010 Hb_077165_010 Hb_003784_030--Hb_077165_010 Hb_000005_150 Hb_000005_150 Hb_003784_030--Hb_000005_150 Hb_086720_010--Hb_007407_020 Hb_086720_010--Hb_138485_010 Hb_007407_020--Hb_138485_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.149183 0.227388 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis