Hb_086720_010

Information

Type -
Description -
Location Contig86720: 8885-10323
Sequence    

Annotation

kegg
ID cit:102628038
description uncharacterized LOC102628038
nr
ID AAN62346.1
description CTV.19 [Citrus trifoliata]
swissprot
ID -
description -
trembl
ID Q8H6Q9
description CTV.19 OS=Poncirus trifoliata GN=CTV.19 PE=4 SV=1
Gene Ontology
ID GO:0046872
description AF506028_13CTV.19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086720_010 0.0 - - CTV.19 [Citrus trifoliata]
2 Hb_007407_020 0.0010590497 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000295_140 0.0025405219 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
4 Hb_032907_020 0.0033696747 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_053224_010 0.008597952 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
6 Hb_138485_010 0.0088669879 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
7 Hb_168451_010 0.0089217685 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
8 Hb_003784_030 0.0168986485 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008887_060 0.0183054716 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
10 Hb_001021_190 0.0197293851 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
11 Hb_011515_020 0.0224001668 - - PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]
12 Hb_004117_220 0.0242500102 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
13 Hb_000378_020 0.0244925174 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
14 Hb_000123_080 0.0255625146 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
15 Hb_013405_170 0.0262119136 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
16 Hb_005743_040 0.0270738937 - - JHL22C18.10 [Jatropha curcas]
17 Hb_077165_010 0.0291731509 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000005_150 0.030038917 - - PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]
19 Hb_002383_010 0.0310604409 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
20 Hb_021281_010 0.0317079426 - - Major latex protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_086720_010 Hb_086720_010 Hb_007407_020 Hb_007407_020 Hb_086720_010--Hb_007407_020 Hb_000295_140 Hb_000295_140 Hb_086720_010--Hb_000295_140 Hb_032907_020 Hb_032907_020 Hb_086720_010--Hb_032907_020 Hb_053224_010 Hb_053224_010 Hb_086720_010--Hb_053224_010 Hb_138485_010 Hb_138485_010 Hb_086720_010--Hb_138485_010 Hb_168451_010 Hb_168451_010 Hb_086720_010--Hb_168451_010 Hb_007407_020--Hb_000295_140 Hb_007407_020--Hb_032907_020 Hb_007407_020--Hb_138485_010 Hb_007407_020--Hb_053224_010 Hb_007407_020--Hb_168451_010 Hb_000295_140--Hb_032907_020 Hb_000295_140--Hb_053224_010 Hb_000295_140--Hb_168451_010 Hb_000295_140--Hb_138485_010 Hb_032907_020--Hb_053224_010 Hb_032907_020--Hb_168451_010 Hb_032907_020--Hb_138485_010 Hb_053224_010--Hb_168451_010 Hb_003784_030 Hb_003784_030 Hb_053224_010--Hb_003784_030 Hb_008887_060 Hb_008887_060 Hb_138485_010--Hb_008887_060 Hb_004117_220 Hb_004117_220 Hb_138485_010--Hb_004117_220 Hb_168451_010--Hb_003784_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0343957 0.050227 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis