Hb_001279_060

Information

Type transcription factor
Description TF Family: MYB
Location Contig1279: 81678-83301
Sequence    

Annotation

kegg
ID pop:POPTR_0001s36220g
description POPTRDRAFT_549635; hypothetical protein
nr
ID XP_002298589.1
description hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
swissprot
ID P81394
description Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1
trembl
ID B9GIZ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s36220g PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 315-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_060 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
2 Hb_003891_020 0.0005195665 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
3 Hb_043777_010 0.0056913242 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002759_210 0.0064755749 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
5 Hb_000101_110 0.00818974 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
6 Hb_000012_360 0.0083073374 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
7 Hb_000272_060 0.0092295949 - - unnamed protein product [Vitis vinifera]
8 Hb_002490_070 0.0101223827 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
9 Hb_003529_020 0.011305357 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
10 Hb_045150_010 0.0141682996 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
11 Hb_001882_120 0.0142569305 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
12 Hb_021281_010 0.0152977299 - - Major latex protein, putative [Ricinus communis]
13 Hb_001504_250 0.0195616634 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_005743_040 0.0199327136 - - JHL22C18.10 [Jatropha curcas]
15 Hb_013405_170 0.0207947881 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
16 Hb_001456_010 0.0209577995 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_000123_080 0.0214442417 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
18 Hb_000378_020 0.022514298 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
19 Hb_121058_010 0.0226216532 - - ATP binding protein, putative [Ricinus communis]
20 Hb_185246_010 0.0226771251 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]

Gene co-expression network

sample Hb_001279_060 Hb_001279_060 Hb_003891_020 Hb_003891_020 Hb_001279_060--Hb_003891_020 Hb_043777_010 Hb_043777_010 Hb_001279_060--Hb_043777_010 Hb_002759_210 Hb_002759_210 Hb_001279_060--Hb_002759_210 Hb_000101_110 Hb_000101_110 Hb_001279_060--Hb_000101_110 Hb_000012_360 Hb_000012_360 Hb_001279_060--Hb_000012_360 Hb_000272_060 Hb_000272_060 Hb_001279_060--Hb_000272_060 Hb_003891_020--Hb_043777_010 Hb_003891_020--Hb_002759_210 Hb_003891_020--Hb_000101_110 Hb_003891_020--Hb_000012_360 Hb_003891_020--Hb_000272_060 Hb_043777_010--Hb_000101_110 Hb_001882_120 Hb_001882_120 Hb_043777_010--Hb_001882_120 Hb_021281_010 Hb_021281_010 Hb_043777_010--Hb_021281_010 Hb_043777_010--Hb_002759_210 Hb_002759_210--Hb_000012_360 Hb_002759_210--Hb_000272_060 Hb_002490_070 Hb_002490_070 Hb_002759_210--Hb_002490_070 Hb_003529_020 Hb_003529_020 Hb_002759_210--Hb_003529_020 Hb_000101_110--Hb_001882_120 Hb_000101_110--Hb_021281_010 Hb_005743_040 Hb_005743_040 Hb_000101_110--Hb_005743_040 Hb_000012_360--Hb_000272_060 Hb_000012_360--Hb_002490_070 Hb_000012_360--Hb_003529_020 Hb_045150_010 Hb_045150_010 Hb_000012_360--Hb_045150_010 Hb_000272_060--Hb_002490_070 Hb_000272_060--Hb_003529_020 Hb_000272_060--Hb_045150_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0414693 0.0484285 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis