Hb_002490_070

Information

Type -
Description -
Location Contig2490: 48328-49156
Sequence    

Annotation

kegg
ID pop:POPTR_0004s09770g
description POPTRDRAFT_555863; hypothetical protein
nr
ID XP_011021259.1
description PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H307
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s09770g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002490_070 0.0 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
2 Hb_000272_060 0.0008928169 - - unnamed protein product [Vitis vinifera]
3 Hb_003529_020 0.0011830216 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
4 Hb_000012_360 0.0018150986 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
5 Hb_002759_210 0.0036468913 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
6 Hb_045150_010 0.0040461194 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
7 Hb_001504_250 0.0094399324 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_001279_060 0.0101223827 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
9 Hb_003891_020 0.0106419296 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
10 Hb_001456_010 0.010836218 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_121058_010 0.0125002678 - - ATP binding protein, putative [Ricinus communis]
12 Hb_185246_010 0.0125557467 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
13 Hb_104011_010 0.0144553175 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
14 Hb_009225_030 0.0150773341 - - ring finger protein, putative [Ricinus communis]
15 Hb_043777_010 0.0158133877 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000101_110 0.0183115904 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
17 Hb_000140_010 0.0211295676 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
18 Hb_003531_110 0.0224685954 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
19 Hb_001882_120 0.0243780779 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
20 Hb_021281_010 0.0254187302 - - Major latex protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002490_070 Hb_002490_070 Hb_000272_060 Hb_000272_060 Hb_002490_070--Hb_000272_060 Hb_003529_020 Hb_003529_020 Hb_002490_070--Hb_003529_020 Hb_000012_360 Hb_000012_360 Hb_002490_070--Hb_000012_360 Hb_002759_210 Hb_002759_210 Hb_002490_070--Hb_002759_210 Hb_045150_010 Hb_045150_010 Hb_002490_070--Hb_045150_010 Hb_001504_250 Hb_001504_250 Hb_002490_070--Hb_001504_250 Hb_000272_060--Hb_000012_360 Hb_000272_060--Hb_003529_020 Hb_000272_060--Hb_002759_210 Hb_000272_060--Hb_045150_010 Hb_001279_060 Hb_001279_060 Hb_000272_060--Hb_001279_060 Hb_003529_020--Hb_045150_010 Hb_003529_020--Hb_000012_360 Hb_003529_020--Hb_002759_210 Hb_003529_020--Hb_001504_250 Hb_000012_360--Hb_002759_210 Hb_000012_360--Hb_045150_010 Hb_000012_360--Hb_001279_060 Hb_002759_210--Hb_001279_060 Hb_003891_020 Hb_003891_020 Hb_002759_210--Hb_003891_020 Hb_045150_010--Hb_001504_250 Hb_001456_010 Hb_001456_010 Hb_045150_010--Hb_001456_010 Hb_001504_250--Hb_001456_010 Hb_121058_010 Hb_121058_010 Hb_001504_250--Hb_121058_010 Hb_185246_010 Hb_185246_010 Hb_001504_250--Hb_185246_010 Hb_104011_010 Hb_104011_010 Hb_001504_250--Hb_104011_010 Hb_009225_030 Hb_009225_030 Hb_001504_250--Hb_009225_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0283484 0.0315612 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis