Hb_009225_030

Information

Type -
Description -
Location Contig9225: 64303-65577
Sequence    

Annotation

kegg
ID rcu:RCOM_0801760
description ring finger protein, putative
nr
ID XP_002516536.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q5XF85
description E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2
trembl
ID B9RS17
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0801760 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009225_030 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_104011_010 0.0006220636 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
3 Hb_185246_010 0.0025217532 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
4 Hb_121058_010 0.0025772349 - - ATP binding protein, putative [Ricinus communis]
5 Hb_001456_010 0.0042413568 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_001504_250 0.0056376805 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_000140_010 0.0060529026 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
8 Hb_003531_110 0.0073921302 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
9 Hb_045150_010 0.0110314487 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
10 Hb_003529_020 0.0138943987 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
11 Hb_002490_070 0.0150773341 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
12 Hb_000272_060 0.0159700762 - - unnamed protein product [Vitis vinifera]
13 Hb_001377_140 0.0164260509 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
14 Hb_000012_360 0.0168922719 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
15 Hb_002759_210 0.0187238672 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
16 Hb_002254_020 0.0188971214 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
17 Hb_003792_010 0.0206452966 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001279_060 0.0251983773 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
19 Hb_003891_020 0.0257178263 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
20 Hb_102933_010 0.0261284157 - - Pectate lyase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_009225_030 Hb_009225_030 Hb_104011_010 Hb_104011_010 Hb_009225_030--Hb_104011_010 Hb_185246_010 Hb_185246_010 Hb_009225_030--Hb_185246_010 Hb_121058_010 Hb_121058_010 Hb_009225_030--Hb_121058_010 Hb_001456_010 Hb_001456_010 Hb_009225_030--Hb_001456_010 Hb_001504_250 Hb_001504_250 Hb_009225_030--Hb_001504_250 Hb_000140_010 Hb_000140_010 Hb_009225_030--Hb_000140_010 Hb_104011_010--Hb_185246_010 Hb_104011_010--Hb_121058_010 Hb_104011_010--Hb_001456_010 Hb_104011_010--Hb_001504_250 Hb_104011_010--Hb_000140_010 Hb_185246_010--Hb_121058_010 Hb_185246_010--Hb_001456_010 Hb_185246_010--Hb_001504_250 Hb_045150_010 Hb_045150_010 Hb_185246_010--Hb_045150_010 Hb_121058_010--Hb_001456_010 Hb_121058_010--Hb_001504_250 Hb_121058_010--Hb_045150_010 Hb_001456_010--Hb_001504_250 Hb_001456_010--Hb_045150_010 Hb_001504_250--Hb_045150_010 Hb_003531_110 Hb_003531_110 Hb_000140_010--Hb_003531_110 Hb_000140_010--Hb_185246_010 Hb_000140_010--Hb_121058_010 Hb_000140_010--Hb_001456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0130233 0.0135047 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis