Hb_121058_010

Information

Type -
Description -
Location Contig121058: 26-496
Sequence    

Annotation

kegg
ID rcu:RCOM_0560530
description ATP binding protein, putative (EC:2.7.11.30 2.7.11.25)
nr
ID XP_002520279.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S2R0
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0560530 PE=4 SV=1
Gene Ontology
ID GO:0005622
description wall-associated kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121058_010 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_185246_010 5.54818e-05 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
3 Hb_001456_010 0.0016641281 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_104011_010 0.0019551724 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
5 Hb_009225_030 0.0025772349 - - ring finger protein, putative [Ricinus communis]
6 Hb_001504_250 0.0030604609 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_045150_010 0.0084542972 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
8 Hb_000140_010 0.0086300909 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
9 Hb_003531_110 0.0099692993 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_003529_020 0.0113173044 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
11 Hb_002490_070 0.0125002678 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
12 Hb_000272_060 0.0133930327 - - unnamed protein product [Vitis vinifera]
13 Hb_000012_360 0.0143152534 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
14 Hb_002759_210 0.016146903 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
15 Hb_001377_140 0.019003007 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
16 Hb_002254_020 0.0214739938 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
17 Hb_001279_060 0.0226216532 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
18 Hb_003891_020 0.0231411247 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
19 Hb_003792_010 0.0232221033 - - conserved hypothetical protein [Ricinus communis]
20 Hb_043777_010 0.0283117036 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_121058_010 Hb_121058_010 Hb_185246_010 Hb_185246_010 Hb_121058_010--Hb_185246_010 Hb_001456_010 Hb_001456_010 Hb_121058_010--Hb_001456_010 Hb_104011_010 Hb_104011_010 Hb_121058_010--Hb_104011_010 Hb_009225_030 Hb_009225_030 Hb_121058_010--Hb_009225_030 Hb_001504_250 Hb_001504_250 Hb_121058_010--Hb_001504_250 Hb_045150_010 Hb_045150_010 Hb_121058_010--Hb_045150_010 Hb_185246_010--Hb_001456_010 Hb_185246_010--Hb_104011_010 Hb_185246_010--Hb_009225_030 Hb_185246_010--Hb_001504_250 Hb_185246_010--Hb_045150_010 Hb_001456_010--Hb_001504_250 Hb_001456_010--Hb_104011_010 Hb_001456_010--Hb_009225_030 Hb_001456_010--Hb_045150_010 Hb_104011_010--Hb_009225_030 Hb_104011_010--Hb_001504_250 Hb_000140_010 Hb_000140_010 Hb_104011_010--Hb_000140_010 Hb_009225_030--Hb_001504_250 Hb_009225_030--Hb_000140_010 Hb_001504_250--Hb_045150_010 Hb_003529_020 Hb_003529_020 Hb_045150_010--Hb_003529_020 Hb_002490_070 Hb_002490_070 Hb_045150_010--Hb_002490_070 Hb_000272_060 Hb_000272_060 Hb_045150_010--Hb_000272_060 Hb_000012_360 Hb_000012_360 Hb_045150_010--Hb_000012_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.146462 0.153731 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis