Hb_001504_250

Information

Type -
Description -
Location Contig1504: 252295-255189
Sequence    

Annotation

kegg
ID rcu:RCOM_0471430
description ATP-binding cassette transporter, putative (EC:3.6.3.28 3.6.3.31)
nr
ID AIU41654.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q76CU2
description Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1
trembl
ID A0A097P9Q9
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCG40 PE=2 SV=1
Gene Ontology
ID GO:0016020
description atp-binding cassette

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_250 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_001456_010 0.0013963353 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_121058_010 0.0030604609 - - ATP binding protein, putative [Ricinus communis]
4 Hb_185246_010 0.0031159426 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
5 Hb_104011_010 0.0050156229 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
6 Hb_045150_010 0.0053938847 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
7 Hb_009225_030 0.0056376805 - - ring finger protein, putative [Ricinus communis]
8 Hb_003529_020 0.0082569429 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
9 Hb_002490_070 0.0094399324 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
10 Hb_000272_060 0.010332719 - - unnamed protein product [Vitis vinifera]
11 Hb_000012_360 0.0112549639 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
12 Hb_000140_010 0.0116904447 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
13 Hb_003531_110 0.0130296223 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
14 Hb_002759_210 0.0130866668 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
15 Hb_001279_060 0.0195616634 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
16 Hb_003891_020 0.0200811586 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
17 Hb_001377_140 0.0220630231 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
18 Hb_002254_020 0.0245338958 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
19 Hb_043777_010 0.0252520046 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003792_010 0.0262819168 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001504_250 Hb_001504_250 Hb_001456_010 Hb_001456_010 Hb_001504_250--Hb_001456_010 Hb_121058_010 Hb_121058_010 Hb_001504_250--Hb_121058_010 Hb_185246_010 Hb_185246_010 Hb_001504_250--Hb_185246_010 Hb_104011_010 Hb_104011_010 Hb_001504_250--Hb_104011_010 Hb_045150_010 Hb_045150_010 Hb_001504_250--Hb_045150_010 Hb_009225_030 Hb_009225_030 Hb_001504_250--Hb_009225_030 Hb_001456_010--Hb_121058_010 Hb_001456_010--Hb_185246_010 Hb_001456_010--Hb_104011_010 Hb_001456_010--Hb_009225_030 Hb_001456_010--Hb_045150_010 Hb_121058_010--Hb_185246_010 Hb_121058_010--Hb_104011_010 Hb_121058_010--Hb_009225_030 Hb_121058_010--Hb_045150_010 Hb_185246_010--Hb_104011_010 Hb_185246_010--Hb_009225_030 Hb_185246_010--Hb_045150_010 Hb_104011_010--Hb_009225_030 Hb_000140_010 Hb_000140_010 Hb_104011_010--Hb_000140_010 Hb_003529_020 Hb_003529_020 Hb_045150_010--Hb_003529_020 Hb_002490_070 Hb_002490_070 Hb_045150_010--Hb_002490_070 Hb_000272_060 Hb_000272_060 Hb_045150_010--Hb_000272_060 Hb_000012_360 Hb_000012_360 Hb_045150_010--Hb_000012_360 Hb_009225_030--Hb_000140_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00987496 0.0105156 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis