Hb_104011_010

Information

Type -
Description -
Location Contig104011: 173-1312
Sequence    

Annotation

kegg
ID rcu:RCOM_1383800
description serine carboxypeptidase, putative (EC:3.4.16.5)
nr
ID XP_012093158.1
description PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
swissprot
ID Q9C7Z9
description Serine carboxypeptidase-like 18 OS=Arabidopsis thaliana GN=SCPL18 PE=2 SV=2
trembl
ID A0A067LBB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16366 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104011_010 0.0 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
2 Hb_009225_030 0.0006220636 - - ring finger protein, putative [Ricinus communis]
3 Hb_185246_010 0.0018996906 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
4 Hb_121058_010 0.0019551724 - - ATP binding protein, putative [Ricinus communis]
5 Hb_001456_010 0.0036192964 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_001504_250 0.0050156229 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_000140_010 0.0066749576 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
8 Hb_003531_110 0.008014181 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
9 Hb_045150_010 0.0104094098 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
10 Hb_003529_020 0.0132723748 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
11 Hb_002490_070 0.0144553175 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
12 Hb_000272_060 0.0153480655 - - unnamed protein product [Vitis vinifera]
13 Hb_000012_360 0.0162702676 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
14 Hb_001377_140 0.0170480541 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
15 Hb_002759_210 0.0181018768 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
16 Hb_002254_020 0.0195191055 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
17 Hb_003792_010 0.0212672656 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001279_060 0.0245764476 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
19 Hb_003891_020 0.0250959022 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
20 Hb_102933_010 0.0267503286 - - Pectate lyase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_104011_010 Hb_104011_010 Hb_009225_030 Hb_009225_030 Hb_104011_010--Hb_009225_030 Hb_185246_010 Hb_185246_010 Hb_104011_010--Hb_185246_010 Hb_121058_010 Hb_121058_010 Hb_104011_010--Hb_121058_010 Hb_001456_010 Hb_001456_010 Hb_104011_010--Hb_001456_010 Hb_001504_250 Hb_001504_250 Hb_104011_010--Hb_001504_250 Hb_000140_010 Hb_000140_010 Hb_104011_010--Hb_000140_010 Hb_009225_030--Hb_185246_010 Hb_009225_030--Hb_121058_010 Hb_009225_030--Hb_001456_010 Hb_009225_030--Hb_001504_250 Hb_009225_030--Hb_000140_010 Hb_185246_010--Hb_121058_010 Hb_185246_010--Hb_001456_010 Hb_185246_010--Hb_001504_250 Hb_045150_010 Hb_045150_010 Hb_185246_010--Hb_045150_010 Hb_121058_010--Hb_001456_010 Hb_121058_010--Hb_001504_250 Hb_121058_010--Hb_045150_010 Hb_001456_010--Hb_001504_250 Hb_001456_010--Hb_045150_010 Hb_001504_250--Hb_045150_010 Hb_003531_110 Hb_003531_110 Hb_000140_010--Hb_003531_110 Hb_000140_010--Hb_185246_010 Hb_000140_010--Hb_121058_010 Hb_000140_010--Hb_001456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.351709 0.36578 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis