Hb_045150_010

Information

Type -
Description -
Location Contig45150: 1270-6912
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03350g
description POPTRDRAFT_241047; hypothetical protein
nr
ID XP_011003818.1
description PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID B9I890
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s03350g PE=4 SV=2
Gene Ontology
ID GO:0008237
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43197: 5957-6385
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_045150_010 0.0 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
2 Hb_003529_020 0.0028631025 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
3 Hb_002490_070 0.0040461194 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
4 Hb_000272_060 0.00493893 - - unnamed protein product [Vitis vinifera]
5 Hb_001504_250 0.0053938847 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_000012_360 0.005861203 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
7 Hb_001456_010 0.0067902022 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_002759_210 0.0076929711 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
9 Hb_121058_010 0.0084542972 - - ATP binding protein, putative [Ricinus communis]
10 Hb_185246_010 0.0085097776 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
11 Hb_104011_010 0.0104094098 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
12 Hb_009225_030 0.0110314487 - - ring finger protein, putative [Ricinus communis]
13 Hb_001279_060 0.0141682996 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
14 Hb_003891_020 0.0146878282 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
15 Hb_000140_010 0.0170839556 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
16 Hb_003531_110 0.0184230577 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_043777_010 0.0198590632 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000101_110 0.0223571309 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_001377_140 0.0274557746 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
20 Hb_001882_120 0.0284232162 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]

Gene co-expression network

sample Hb_045150_010 Hb_045150_010 Hb_003529_020 Hb_003529_020 Hb_045150_010--Hb_003529_020 Hb_002490_070 Hb_002490_070 Hb_045150_010--Hb_002490_070 Hb_000272_060 Hb_000272_060 Hb_045150_010--Hb_000272_060 Hb_001504_250 Hb_001504_250 Hb_045150_010--Hb_001504_250 Hb_000012_360 Hb_000012_360 Hb_045150_010--Hb_000012_360 Hb_001456_010 Hb_001456_010 Hb_045150_010--Hb_001456_010 Hb_003529_020--Hb_002490_070 Hb_003529_020--Hb_000272_060 Hb_003529_020--Hb_000012_360 Hb_002759_210 Hb_002759_210 Hb_003529_020--Hb_002759_210 Hb_003529_020--Hb_001504_250 Hb_002490_070--Hb_000272_060 Hb_002490_070--Hb_000012_360 Hb_002490_070--Hb_002759_210 Hb_002490_070--Hb_001504_250 Hb_000272_060--Hb_000012_360 Hb_000272_060--Hb_002759_210 Hb_001279_060 Hb_001279_060 Hb_000272_060--Hb_001279_060 Hb_001504_250--Hb_001456_010 Hb_121058_010 Hb_121058_010 Hb_001504_250--Hb_121058_010 Hb_185246_010 Hb_185246_010 Hb_001504_250--Hb_185246_010 Hb_104011_010 Hb_104011_010 Hb_001504_250--Hb_104011_010 Hb_009225_030 Hb_009225_030 Hb_001504_250--Hb_009225_030 Hb_000012_360--Hb_002759_210 Hb_000012_360--Hb_001279_060 Hb_001456_010--Hb_121058_010 Hb_001456_010--Hb_185246_010 Hb_001456_010--Hb_104011_010 Hb_001456_010--Hb_009225_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.012132 0.0132517 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis