Hb_000272_060

Information

Type -
Description -
Location Contig272: 75047-76183
Sequence    

Annotation

kegg
ID vvi:100244749
description acidic mammalian chitinase-like
nr
ID CBI25622.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q13231
description Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1
trembl
ID D7T540
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0149g00270 PE=3 SV=1
Gene Ontology
ID GO:0004553
description acidic mammalian chitinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000272_060 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_002490_070 0.0008928169 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
3 Hb_000012_360 0.0009222822 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
4 Hb_003529_020 0.0020758377 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
5 Hb_002759_210 0.0027540776 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
6 Hb_045150_010 0.00493893 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
7 Hb_001279_060 0.0092295949 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
8 Hb_003891_020 0.009749145 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
9 Hb_001504_250 0.010332719 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_001456_010 0.0117289954 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_121058_010 0.0133930327 - - ATP binding protein, putative [Ricinus communis]
12 Hb_185246_010 0.0134485111 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
13 Hb_043777_010 0.0149206444 - - conserved hypothetical protein [Ricinus communis]
14 Hb_104011_010 0.0153480655 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
15 Hb_009225_030 0.0159700762 - - ring finger protein, putative [Ricinus communis]
16 Hb_000101_110 0.0174188732 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
17 Hb_000140_010 0.0220222401 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
18 Hb_003531_110 0.0233612494 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
19 Hb_001882_120 0.0234854401 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
20 Hb_021281_010 0.0245261083 - - Major latex protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000272_060 Hb_000272_060 Hb_002490_070 Hb_002490_070 Hb_000272_060--Hb_002490_070 Hb_000012_360 Hb_000012_360 Hb_000272_060--Hb_000012_360 Hb_003529_020 Hb_003529_020 Hb_000272_060--Hb_003529_020 Hb_002759_210 Hb_002759_210 Hb_000272_060--Hb_002759_210 Hb_045150_010 Hb_045150_010 Hb_000272_060--Hb_045150_010 Hb_001279_060 Hb_001279_060 Hb_000272_060--Hb_001279_060 Hb_002490_070--Hb_003529_020 Hb_002490_070--Hb_000012_360 Hb_002490_070--Hb_002759_210 Hb_002490_070--Hb_045150_010 Hb_001504_250 Hb_001504_250 Hb_002490_070--Hb_001504_250 Hb_000012_360--Hb_002759_210 Hb_000012_360--Hb_003529_020 Hb_000012_360--Hb_045150_010 Hb_000012_360--Hb_001279_060 Hb_003529_020--Hb_045150_010 Hb_003529_020--Hb_002759_210 Hb_003529_020--Hb_001504_250 Hb_002759_210--Hb_001279_060 Hb_003891_020 Hb_003891_020 Hb_002759_210--Hb_003891_020 Hb_045150_010--Hb_001504_250 Hb_001456_010 Hb_001456_010 Hb_045150_010--Hb_001456_010 Hb_001279_060--Hb_003891_020 Hb_043777_010 Hb_043777_010 Hb_001279_060--Hb_043777_010 Hb_000101_110 Hb_000101_110 Hb_001279_060--Hb_000101_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0283002 0.0316405 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis