Hb_043777_010

Information

Type -
Description -
Location Contig43777: 2332-2916
Sequence    

Annotation

kegg
ID rcu:RCOM_2066130
description hypothetical protein
nr
ID XP_002538799.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TKN0
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_2066130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043777_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000101_110 0.0024984568 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_003891_020 0.0051717631 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
4 Hb_001279_060 0.0056913242 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
5 Hb_001882_120 0.0085658514 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
6 Hb_021281_010 0.0096067007 - - Major latex protein, putative [Ricinus communis]
7 Hb_002759_210 0.0121667418 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
8 Hb_000012_360 0.0139984296 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
9 Hb_005743_040 0.0142419601 - - JHL22C18.10 [Jatropha curcas]
10 Hb_000272_060 0.0149206444 - - unnamed protein product [Vitis vinifera]
11 Hb_013405_170 0.0151040955 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
12 Hb_000123_080 0.015753597 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
13 Hb_002490_070 0.0158133877 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
14 Hb_000378_020 0.0168237359 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
15 Hb_003529_020 0.0169962981 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
16 Hb_004117_220 0.0170662705 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
17 Hb_045150_010 0.0198590632 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
18 Hb_008887_060 0.0230109347 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
19 Hb_001504_250 0.0252520046 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_001456_010 0.0266480126 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_043777_010 Hb_043777_010 Hb_000101_110 Hb_000101_110 Hb_043777_010--Hb_000101_110 Hb_003891_020 Hb_003891_020 Hb_043777_010--Hb_003891_020 Hb_001279_060 Hb_001279_060 Hb_043777_010--Hb_001279_060 Hb_001882_120 Hb_001882_120 Hb_043777_010--Hb_001882_120 Hb_021281_010 Hb_021281_010 Hb_043777_010--Hb_021281_010 Hb_002759_210 Hb_002759_210 Hb_043777_010--Hb_002759_210 Hb_000101_110--Hb_001882_120 Hb_000101_110--Hb_021281_010 Hb_000101_110--Hb_003891_020 Hb_000101_110--Hb_001279_060 Hb_005743_040 Hb_005743_040 Hb_000101_110--Hb_005743_040 Hb_003891_020--Hb_001279_060 Hb_003891_020--Hb_002759_210 Hb_000012_360 Hb_000012_360 Hb_003891_020--Hb_000012_360 Hb_000272_060 Hb_000272_060 Hb_003891_020--Hb_000272_060 Hb_001279_060--Hb_002759_210 Hb_001279_060--Hb_000012_360 Hb_001279_060--Hb_000272_060 Hb_001882_120--Hb_021281_010 Hb_001882_120--Hb_005743_040 Hb_013405_170 Hb_013405_170 Hb_001882_120--Hb_013405_170 Hb_000123_080 Hb_000123_080 Hb_001882_120--Hb_000123_080 Hb_000378_020 Hb_000378_020 Hb_001882_120--Hb_000378_020 Hb_021281_010--Hb_005743_040 Hb_021281_010--Hb_013405_170 Hb_021281_010--Hb_000123_080 Hb_021281_010--Hb_000378_020 Hb_002759_210--Hb_000012_360 Hb_002759_210--Hb_000272_060 Hb_002490_070 Hb_002490_070 Hb_002759_210--Hb_002490_070 Hb_003529_020 Hb_003529_020 Hb_002759_210--Hb_003529_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.134842 0.161764 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis