Hb_003531_110

Information

Type -
Description -
Location Contig3531: 123235-124652
Sequence    

Annotation

kegg
ID mdm:103454565
description putative UPF0481 protein At3g02645
nr
ID XP_012085983.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067JTY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22474 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36677: 123608-123765 , PASA_asmbl_36678: 124029-124183
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003531_110 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_000140_010 0.0013392483 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
3 Hb_009225_030 0.0073921302 - - ring finger protein, putative [Ricinus communis]
4 Hb_104011_010 0.008014181 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
5 Hb_001377_140 0.0090343009 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
6 Hb_185246_010 0.0099138193 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
7 Hb_121058_010 0.0099692993 - - ATP binding protein, putative [Ricinus communis]
8 Hb_002254_020 0.0115055482 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
9 Hb_001456_010 0.0116333605 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_001504_250 0.0130296223 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_003792_010 0.0132538675 - - conserved hypothetical protein [Ricinus communis]
12 Hb_045150_010 0.0184230577 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
13 Hb_102933_010 0.0187375399 - - Pectate lyase precursor, putative [Ricinus communis]
14 Hb_003529_020 0.0212857703 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
15 Hb_002490_070 0.0224685954 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
16 Hb_000272_060 0.0233612494 - - unnamed protein product [Vitis vinifera]
17 Hb_000152_690 0.0239073336 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
18 Hb_000012_360 0.0242833498 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
19 Hb_002759_210 0.0261147428 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
20 Hb_010543_010 0.0266584389 - - Phospholipid-transporting ATPase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003531_110 Hb_003531_110 Hb_000140_010 Hb_000140_010 Hb_003531_110--Hb_000140_010 Hb_009225_030 Hb_009225_030 Hb_003531_110--Hb_009225_030 Hb_104011_010 Hb_104011_010 Hb_003531_110--Hb_104011_010 Hb_001377_140 Hb_001377_140 Hb_003531_110--Hb_001377_140 Hb_185246_010 Hb_185246_010 Hb_003531_110--Hb_185246_010 Hb_121058_010 Hb_121058_010 Hb_003531_110--Hb_121058_010 Hb_000140_010--Hb_009225_030 Hb_000140_010--Hb_104011_010 Hb_000140_010--Hb_185246_010 Hb_000140_010--Hb_121058_010 Hb_001456_010 Hb_001456_010 Hb_000140_010--Hb_001456_010 Hb_009225_030--Hb_104011_010 Hb_009225_030--Hb_185246_010 Hb_009225_030--Hb_121058_010 Hb_009225_030--Hb_001456_010 Hb_001504_250 Hb_001504_250 Hb_009225_030--Hb_001504_250 Hb_104011_010--Hb_185246_010 Hb_104011_010--Hb_121058_010 Hb_104011_010--Hb_001456_010 Hb_104011_010--Hb_001504_250 Hb_002254_020 Hb_002254_020 Hb_001377_140--Hb_002254_020 Hb_003792_010 Hb_003792_010 Hb_001377_140--Hb_003792_010 Hb_102933_010 Hb_102933_010 Hb_001377_140--Hb_102933_010 Hb_001377_140--Hb_000140_010 Hb_000152_690 Hb_000152_690 Hb_001377_140--Hb_000152_690 Hb_185246_010--Hb_121058_010 Hb_185246_010--Hb_001456_010 Hb_185246_010--Hb_001504_250 Hb_045150_010 Hb_045150_010 Hb_185246_010--Hb_045150_010 Hb_121058_010--Hb_001456_010 Hb_121058_010--Hb_001504_250 Hb_121058_010--Hb_045150_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.389928 0.390506 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis