Hb_000152_690

Information

Type -
Description -
Location Contig152: 570221-570673
Sequence    

Annotation

kegg
ID rcu:RCOM_1500370
description hypothetical protein
nr
ID XP_012090760.1
description PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9R9S3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1500370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_690 0.0 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
2 Hb_010543_010 0.002751715 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
3 Hb_001946_090 0.0037946737 - - -
4 Hb_102933_010 0.0051705981 - - Pectate lyase precursor, putative [Ricinus communis]
5 Hb_005065_090 0.0088602626 - - zinc/iron transporter, putative [Ricinus communis]
6 Hb_000760_090 0.009101539 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
7 Hb_003792_010 0.010654638 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002254_020 0.0124029695 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
9 Hb_001488_170 0.0125540355 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
10 Hb_001645_080 0.0145521824 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
11 Hb_001377_140 0.0148741475 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
12 Hb_005663_020 0.0150806678 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
13 Hb_000053_140 0.0191566573 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003531_110 0.0239073336 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_000140_010 0.0252463015 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
16 Hb_004092_020 0.0287310612 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
17 Hb_002284_140 0.029128048 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
18 Hb_009225_030 0.0312975462 - - ring finger protein, putative [Ricinus communis]
19 Hb_104011_010 0.0319193944 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
20 Hb_185246_010 0.0338183743 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]

Gene co-expression network

sample Hb_000152_690 Hb_000152_690 Hb_010543_010 Hb_010543_010 Hb_000152_690--Hb_010543_010 Hb_001946_090 Hb_001946_090 Hb_000152_690--Hb_001946_090 Hb_102933_010 Hb_102933_010 Hb_000152_690--Hb_102933_010 Hb_005065_090 Hb_005065_090 Hb_000152_690--Hb_005065_090 Hb_000760_090 Hb_000760_090 Hb_000152_690--Hb_000760_090 Hb_003792_010 Hb_003792_010 Hb_000152_690--Hb_003792_010 Hb_010543_010--Hb_001946_090 Hb_010543_010--Hb_005065_090 Hb_010543_010--Hb_000760_090 Hb_010543_010--Hb_102933_010 Hb_001488_170 Hb_001488_170 Hb_010543_010--Hb_001488_170 Hb_001946_090--Hb_005065_090 Hb_001946_090--Hb_000760_090 Hb_001946_090--Hb_001488_170 Hb_001946_090--Hb_102933_010 Hb_102933_010--Hb_003792_010 Hb_002254_020 Hb_002254_020 Hb_102933_010--Hb_002254_020 Hb_001377_140 Hb_001377_140 Hb_102933_010--Hb_001377_140 Hb_005065_090--Hb_000760_090 Hb_005065_090--Hb_001488_170 Hb_001645_080 Hb_001645_080 Hb_005065_090--Hb_001645_080 Hb_005663_020 Hb_005663_020 Hb_005065_090--Hb_005663_020 Hb_000760_090--Hb_001488_170 Hb_000760_090--Hb_001645_080 Hb_000760_090--Hb_005663_020 Hb_003792_010--Hb_002254_020 Hb_003792_010--Hb_001377_140 Hb_003531_110 Hb_003531_110 Hb_003792_010--Hb_003531_110 Hb_003792_010--Hb_010543_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.112012 0.100226 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis