Hb_001645_080

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1645: 119507-120124
Sequence    

Annotation

kegg
ID rcu:RCOM_0864880
description Transcriptional regulator SUPERMAN, putative
nr
ID ADO15282.1
description palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
swissprot
ID Q9LHS9
description Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2
trembl
ID E2IBQ0
description Palmate-like pentafoliata 1 transcription factor (Fragment) OS=Manihot esculenta GN=PALM1 PE=4 SV=1
Gene Ontology
ID GO:0046872
description palmate-like pentafoliata 1 transcription factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15123: 119546-119844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001645_080 0.0 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
2 Hb_005663_020 0.0005285261 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
3 Hb_001488_170 0.0019982749 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
4 Hb_000053_140 0.0046049258 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000760_090 0.0054508964 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
6 Hb_005065_090 0.005692177 - - zinc/iron transporter, putative [Ricinus communis]
7 Hb_001946_090 0.0107577166 - - -
8 Hb_010543_010 0.0118006327 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
9 Hb_004092_020 0.0141809668 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
10 Hb_000152_690 0.0145521824 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
11 Hb_002284_140 0.0145780419 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
12 Hb_000556_210 0.0196764428 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
13 Hb_102933_010 0.0197222621 - - Pectate lyase precursor, putative [Ricinus communis]
14 Hb_002106_020 0.0222623028 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
15 Hb_003792_010 0.0252054567 - - conserved hypothetical protein [Ricinus communis]
16 Hb_183658_010 0.0252160423 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
17 Hb_151697_010 0.0263201833 - - clathrin assembly protein, putative [Ricinus communis]
18 Hb_009711_060 0.0265816369 - - -
19 Hb_002254_020 0.0269534548 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
20 Hb_001377_140 0.0294241091 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]

Gene co-expression network

sample Hb_001645_080 Hb_001645_080 Hb_005663_020 Hb_005663_020 Hb_001645_080--Hb_005663_020 Hb_001488_170 Hb_001488_170 Hb_001645_080--Hb_001488_170 Hb_000053_140 Hb_000053_140 Hb_001645_080--Hb_000053_140 Hb_000760_090 Hb_000760_090 Hb_001645_080--Hb_000760_090 Hb_005065_090 Hb_005065_090 Hb_001645_080--Hb_005065_090 Hb_001946_090 Hb_001946_090 Hb_001645_080--Hb_001946_090 Hb_005663_020--Hb_001488_170 Hb_005663_020--Hb_000053_140 Hb_005663_020--Hb_000760_090 Hb_005663_020--Hb_005065_090 Hb_005663_020--Hb_001946_090 Hb_001488_170--Hb_000760_090 Hb_001488_170--Hb_005065_090 Hb_001488_170--Hb_000053_140 Hb_001488_170--Hb_001946_090 Hb_004092_020 Hb_004092_020 Hb_000053_140--Hb_004092_020 Hb_002284_140 Hb_002284_140 Hb_000053_140--Hb_002284_140 Hb_000053_140--Hb_000760_090 Hb_000760_090--Hb_005065_090 Hb_000760_090--Hb_001946_090 Hb_010543_010 Hb_010543_010 Hb_000760_090--Hb_010543_010 Hb_005065_090--Hb_001946_090 Hb_005065_090--Hb_010543_010 Hb_001946_090--Hb_010543_010 Hb_000152_690 Hb_000152_690 Hb_001946_090--Hb_000152_690 Hb_102933_010 Hb_102933_010 Hb_001946_090--Hb_102933_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.196123 0.163832 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis