Hb_001946_090

Information

Type -
Description -
Location Contig1946: 124104-128049
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_090 0.0 - - -
2 Hb_010543_010 0.0010429625 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
3 Hb_000152_690 0.0037946737 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
4 Hb_005065_090 0.0050656484 - - zinc/iron transporter, putative [Ricinus communis]
5 Hb_000760_090 0.0053069294 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
6 Hb_001488_170 0.0087595078 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
7 Hb_102933_010 0.0089652105 - - Pectate lyase precursor, putative [Ricinus communis]
8 Hb_001645_080 0.0107577166 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
9 Hb_005663_020 0.0112862202 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
10 Hb_003792_010 0.0144491083 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000053_140 0.0153623748 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002254_020 0.0161973777 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
13 Hb_001377_140 0.0186684544 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
14 Hb_004092_020 0.0249373422 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
15 Hb_002284_140 0.0253343577 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
16 Hb_003531_110 0.0277011335 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_000140_010 0.0290400082 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
18 Hb_000556_210 0.0304318848 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
19 Hb_002106_020 0.033017225 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
20 Hb_009225_030 0.0350907722 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001946_090 Hb_001946_090 Hb_010543_010 Hb_010543_010 Hb_001946_090--Hb_010543_010 Hb_000152_690 Hb_000152_690 Hb_001946_090--Hb_000152_690 Hb_005065_090 Hb_005065_090 Hb_001946_090--Hb_005065_090 Hb_000760_090 Hb_000760_090 Hb_001946_090--Hb_000760_090 Hb_001488_170 Hb_001488_170 Hb_001946_090--Hb_001488_170 Hb_102933_010 Hb_102933_010 Hb_001946_090--Hb_102933_010 Hb_010543_010--Hb_000152_690 Hb_010543_010--Hb_005065_090 Hb_010543_010--Hb_000760_090 Hb_010543_010--Hb_102933_010 Hb_010543_010--Hb_001488_170 Hb_000152_690--Hb_102933_010 Hb_000152_690--Hb_005065_090 Hb_000152_690--Hb_000760_090 Hb_003792_010 Hb_003792_010 Hb_000152_690--Hb_003792_010 Hb_005065_090--Hb_000760_090 Hb_005065_090--Hb_001488_170 Hb_001645_080 Hb_001645_080 Hb_005065_090--Hb_001645_080 Hb_005663_020 Hb_005663_020 Hb_005065_090--Hb_005663_020 Hb_000760_090--Hb_001488_170 Hb_000760_090--Hb_001645_080 Hb_000760_090--Hb_005663_020 Hb_001488_170--Hb_001645_080 Hb_001488_170--Hb_005663_020 Hb_000053_140 Hb_000053_140 Hb_001488_170--Hb_000053_140 Hb_102933_010--Hb_003792_010 Hb_002254_020 Hb_002254_020 Hb_102933_010--Hb_002254_020 Hb_001377_140 Hb_001377_140 Hb_102933_010--Hb_001377_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.119308 0.10486 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis