Hb_005663_020

Information

Type -
Description -
Location Contig5663: 30462-38726
Sequence    

Annotation

kegg
ID pop:POPTR_0018s14390g
description leucine-rich repeat transmembrane protein kinase
nr
ID XP_006372223.1
description leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
swissprot
ID C0LGU0
description Pollen receptor-like kinase 1 OS=Arabidopsis thaliana GN=PRK1 PE=1 SV=1
trembl
ID B9N839
description Leucine-rich repeat transmembrane protein kinase OS=Populus trichocarpa GN=POPTR_0018s14390g PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase rlk

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005663_020 0.0 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
2 Hb_001645_080 0.0005285261 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
3 Hb_001488_170 0.0025268001 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
4 Hb_000053_140 0.0040764032 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000760_090 0.0059794164 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
6 Hb_005065_090 0.0062206965 - - zinc/iron transporter, putative [Ricinus communis]
7 Hb_001946_090 0.0112862202 - - -
8 Hb_010543_010 0.0123291318 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
9 Hb_004092_020 0.0136524769 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
10 Hb_002284_140 0.0140495542 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
11 Hb_000152_690 0.0150806678 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
12 Hb_000556_210 0.0191479873 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
13 Hb_102933_010 0.0202507142 - - Pectate lyase precursor, putative [Ricinus communis]
14 Hb_002106_020 0.0217338674 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
15 Hb_183658_010 0.0246876331 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_003792_010 0.0257338628 - - conserved hypothetical protein [Ricinus communis]
17 Hb_151697_010 0.0257917847 - - clathrin assembly protein, putative [Ricinus communis]
18 Hb_009711_060 0.0260532408 - - -
19 Hb_002254_020 0.0274818439 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
20 Hb_001377_140 0.0299524723 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]

Gene co-expression network

sample Hb_005663_020 Hb_005663_020 Hb_001645_080 Hb_001645_080 Hb_005663_020--Hb_001645_080 Hb_001488_170 Hb_001488_170 Hb_005663_020--Hb_001488_170 Hb_000053_140 Hb_000053_140 Hb_005663_020--Hb_000053_140 Hb_000760_090 Hb_000760_090 Hb_005663_020--Hb_000760_090 Hb_005065_090 Hb_005065_090 Hb_005663_020--Hb_005065_090 Hb_001946_090 Hb_001946_090 Hb_005663_020--Hb_001946_090 Hb_001645_080--Hb_001488_170 Hb_001645_080--Hb_000053_140 Hb_001645_080--Hb_000760_090 Hb_001645_080--Hb_005065_090 Hb_001645_080--Hb_001946_090 Hb_001488_170--Hb_000760_090 Hb_001488_170--Hb_005065_090 Hb_001488_170--Hb_000053_140 Hb_001488_170--Hb_001946_090 Hb_004092_020 Hb_004092_020 Hb_000053_140--Hb_004092_020 Hb_002284_140 Hb_002284_140 Hb_000053_140--Hb_002284_140 Hb_000053_140--Hb_000760_090 Hb_000760_090--Hb_005065_090 Hb_000760_090--Hb_001946_090 Hb_010543_010 Hb_010543_010 Hb_000760_090--Hb_010543_010 Hb_005065_090--Hb_001946_090 Hb_005065_090--Hb_010543_010 Hb_001946_090--Hb_010543_010 Hb_000152_690 Hb_000152_690 Hb_001946_090--Hb_000152_690 Hb_102933_010 Hb_102933_010 Hb_001946_090--Hb_102933_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0623036 0.0519156 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis