Hb_005065_090

Information

Type -
Description -
Location Contig5065: 120264-125780
Sequence    

Annotation

kegg
ID rcu:RCOM_1500480
description zinc/iron transporter, putative (EC:1.3.1.74)
nr
ID XP_002510959.1
description zinc/iron transporter, putative [Ricinus communis]
swissprot
ID Q8W245
description Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=1 SV=2
trembl
ID B9R9T4
description Zinc/iron transporter, putative OS=Ricinus communis GN=RCOM_1500480 PE=4 SV=1
Gene Ontology
ID GO:0016021
description fe(2+) transport protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005065_090 0.0 - - zinc/iron transporter, putative [Ricinus communis]
2 Hb_000760_090 0.0002412833 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
3 Hb_001488_170 0.0036939168 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
4 Hb_001946_090 0.0050656484 - - -
5 Hb_001645_080 0.005692177 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
6 Hb_010543_010 0.0061085996 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
7 Hb_005663_020 0.0062206965 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
8 Hb_000152_690 0.0088602626 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
9 Hb_000053_140 0.0102970077 - - conserved hypothetical protein [Ricinus communis]
10 Hb_102933_010 0.0140306364 - - Pectate lyase precursor, putative [Ricinus communis]
11 Hb_003792_010 0.0195142584 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004092_020 0.0198725774 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
13 Hb_002284_140 0.020269625 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
14 Hb_002254_020 0.0212624177 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
15 Hb_001377_140 0.0237333205 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
16 Hb_000556_210 0.0253676149 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
17 Hb_002106_020 0.0279532259 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
18 Hb_183658_010 0.0309066476 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
19 Hb_151697_010 0.0320106605 - - clathrin assembly protein, putative [Ricinus communis]
20 Hb_009711_060 0.032272083 - - -

Gene co-expression network

sample Hb_005065_090 Hb_005065_090 Hb_000760_090 Hb_000760_090 Hb_005065_090--Hb_000760_090 Hb_001488_170 Hb_001488_170 Hb_005065_090--Hb_001488_170 Hb_001946_090 Hb_001946_090 Hb_005065_090--Hb_001946_090 Hb_001645_080 Hb_001645_080 Hb_005065_090--Hb_001645_080 Hb_010543_010 Hb_010543_010 Hb_005065_090--Hb_010543_010 Hb_005663_020 Hb_005663_020 Hb_005065_090--Hb_005663_020 Hb_000760_090--Hb_001488_170 Hb_000760_090--Hb_001946_090 Hb_000760_090--Hb_001645_080 Hb_000760_090--Hb_005663_020 Hb_000760_090--Hb_010543_010 Hb_001488_170--Hb_001645_080 Hb_001488_170--Hb_005663_020 Hb_000053_140 Hb_000053_140 Hb_001488_170--Hb_000053_140 Hb_001488_170--Hb_001946_090 Hb_001946_090--Hb_010543_010 Hb_000152_690 Hb_000152_690 Hb_001946_090--Hb_000152_690 Hb_102933_010 Hb_102933_010 Hb_001946_090--Hb_102933_010 Hb_001645_080--Hb_005663_020 Hb_001645_080--Hb_000053_140 Hb_001645_080--Hb_001946_090 Hb_010543_010--Hb_000152_690 Hb_010543_010--Hb_102933_010 Hb_010543_010--Hb_001488_170 Hb_005663_020--Hb_000053_140 Hb_005663_020--Hb_001946_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0943458 0.080961 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis