Hb_002254_020

Information

Type transcription factor
Description TF Family: GRAS
Location Contig2254: 24089-25429
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07930g
description POPTRDRAFT_767807; hypothetical protein
nr
ID XP_012080522.1
description PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
swissprot
ID Q5NE24
description Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1
trembl
ID A0A067LEZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002254_020 0.0 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
2 Hb_003792_010 0.0017484117 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001377_140 0.0024713364 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
4 Hb_102933_010 0.0072325327 - - Pectate lyase precursor, putative [Ricinus communis]
5 Hb_003531_110 0.0115055482 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_000152_690 0.0124029695 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
7 Hb_000140_010 0.0128447279 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
8 Hb_010543_010 0.0151545044 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
9 Hb_001946_090 0.0161973777 - - -
10 Hb_009225_030 0.0188971214 - - ring finger protein, putative [Ricinus communis]
11 Hb_104011_010 0.0195191055 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
12 Hb_005065_090 0.0212624177 - - zinc/iron transporter, putative [Ricinus communis]
13 Hb_185246_010 0.0214185208 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
14 Hb_121058_010 0.0214739938 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000760_090 0.0215036625 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
16 Hb_001456_010 0.0231378353 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_001504_250 0.0245338958 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_001488_170 0.0249556499 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
19 Hb_001645_080 0.0269534548 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
20 Hb_005663_020 0.0274818439 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]

Gene co-expression network

sample Hb_002254_020 Hb_002254_020 Hb_003792_010 Hb_003792_010 Hb_002254_020--Hb_003792_010 Hb_001377_140 Hb_001377_140 Hb_002254_020--Hb_001377_140 Hb_102933_010 Hb_102933_010 Hb_002254_020--Hb_102933_010 Hb_003531_110 Hb_003531_110 Hb_002254_020--Hb_003531_110 Hb_000152_690 Hb_000152_690 Hb_002254_020--Hb_000152_690 Hb_000140_010 Hb_000140_010 Hb_002254_020--Hb_000140_010 Hb_003792_010--Hb_001377_140 Hb_003792_010--Hb_102933_010 Hb_003792_010--Hb_000152_690 Hb_003792_010--Hb_003531_110 Hb_010543_010 Hb_010543_010 Hb_003792_010--Hb_010543_010 Hb_001377_140--Hb_003531_110 Hb_001377_140--Hb_102933_010 Hb_001377_140--Hb_000140_010 Hb_001377_140--Hb_000152_690 Hb_102933_010--Hb_000152_690 Hb_102933_010--Hb_010543_010 Hb_001946_090 Hb_001946_090 Hb_102933_010--Hb_001946_090 Hb_003531_110--Hb_000140_010 Hb_009225_030 Hb_009225_030 Hb_003531_110--Hb_009225_030 Hb_104011_010 Hb_104011_010 Hb_003531_110--Hb_104011_010 Hb_185246_010 Hb_185246_010 Hb_003531_110--Hb_185246_010 Hb_121058_010 Hb_121058_010 Hb_003531_110--Hb_121058_010 Hb_000152_690--Hb_010543_010 Hb_000152_690--Hb_001946_090 Hb_005065_090 Hb_005065_090 Hb_000152_690--Hb_005065_090 Hb_000760_090 Hb_000760_090 Hb_000152_690--Hb_000760_090 Hb_000140_010--Hb_009225_030 Hb_000140_010--Hb_104011_010 Hb_000140_010--Hb_185246_010 Hb_000140_010--Hb_121058_010 Hb_001456_010 Hb_001456_010 Hb_000140_010--Hb_001456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0122674 0.0116375 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis