Hb_000170_260

Information

Type -
Description -
Location Contig170: 335258-337114
Sequence    

Annotation

kegg
ID rcu:RCOM_0562570
description amino acid transporter, putative
nr
ID XP_002520323.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q39134
description Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2
trembl
ID O82044
description Amino acid carrier OS=Ricinus communis GN=aap1 PE=2 SV=1
Gene Ontology
ID GO:0005737
description amino acid permease 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15897: 334935-337230 , PASA_asmbl_15898: 334935-337230 , PASA_asmbl_15899: 337475-337837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_260 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_001032_080 0.0734413817 - - Ankyrin repeat protein [Medicago truncatula]
3 Hb_137862_020 0.0852052039 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
4 Hb_004314_020 0.0867252453 - - Auxin-responsive GH3 family protein [Theobroma cacao]
5 Hb_023712_020 0.0906911679 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
6 Hb_057721_010 0.0976831587 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_002163_070 0.098441601 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
8 Hb_000248_080 0.1014037001 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_006197_010 0.1068189184 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
10 Hb_010252_010 0.1083996667 - - -
11 Hb_009083_020 0.1106583888 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
12 Hb_119583_030 0.1113746407 - - unnamed protein product [Vitis vinifera]
13 Hb_005694_170 0.1135612736 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
14 Hb_136973_020 0.119683808 - - -
15 Hb_172983_010 0.1228954018 - - conserved hypothetical protein [Ricinus communis]
16 Hb_160950_010 0.1235425609 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
17 Hb_002849_010 0.1240776731 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
18 Hb_000025_800 0.1299360738 - - hypothetical protein VITISV_020143 [Vitis vinifera]
19 Hb_022465_010 0.130315063 - - hypothetical protein JCGZ_06012 [Jatropha curcas]
20 Hb_003847_090 0.1345344898 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000170_260 Hb_000170_260 Hb_001032_080 Hb_001032_080 Hb_000170_260--Hb_001032_080 Hb_137862_020 Hb_137862_020 Hb_000170_260--Hb_137862_020 Hb_004314_020 Hb_004314_020 Hb_000170_260--Hb_004314_020 Hb_023712_020 Hb_023712_020 Hb_000170_260--Hb_023712_020 Hb_057721_010 Hb_057721_010 Hb_000170_260--Hb_057721_010 Hb_002163_070 Hb_002163_070 Hb_000170_260--Hb_002163_070 Hb_051408_010 Hb_051408_010 Hb_001032_080--Hb_051408_010 Hb_001032_080--Hb_004314_020 Hb_000227_300 Hb_000227_300 Hb_001032_080--Hb_000227_300 Hb_007426_190 Hb_007426_190 Hb_001032_080--Hb_007426_190 Hb_005694_170 Hb_005694_170 Hb_001032_080--Hb_005694_170 Hb_137862_020--Hb_002163_070 Hb_000248_080 Hb_000248_080 Hb_137862_020--Hb_000248_080 Hb_137862_020--Hb_023712_020 Hb_137862_020--Hb_057721_010 Hb_009083_020 Hb_009083_020 Hb_137862_020--Hb_009083_020 Hb_010252_010 Hb_010252_010 Hb_137862_020--Hb_010252_010 Hb_011028_040 Hb_011028_040 Hb_004314_020--Hb_011028_040 Hb_002849_010 Hb_002849_010 Hb_004314_020--Hb_002849_010 Hb_006873_010 Hb_006873_010 Hb_004314_020--Hb_006873_010 Hb_136973_020 Hb_136973_020 Hb_004314_020--Hb_136973_020 Hb_006197_010 Hb_006197_010 Hb_023712_020--Hb_006197_010 Hb_023712_020--Hb_057721_010 Hb_023712_020--Hb_000248_080 Hb_022465_010 Hb_022465_010 Hb_023712_020--Hb_022465_010 Hb_023712_020--Hb_002163_070 Hb_119583_030 Hb_119583_030 Hb_057721_010--Hb_119583_030 Hb_057721_010--Hb_002163_070 Hb_177179_020 Hb_177179_020 Hb_057721_010--Hb_177179_020 Hb_000025_800 Hb_000025_800 Hb_057721_010--Hb_000025_800 Hb_002163_070--Hb_010252_010 Hb_002163_070--Hb_009083_020 Hb_160950_010 Hb_160950_010 Hb_002163_070--Hb_160950_010 Hb_002163_070--Hb_119583_030 Hb_002163_070--Hb_000248_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 19.032 52.0794 49.9578 0.0275169 0.0677975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0254472 0 0.11178 1.4887

CAGE analysis