Hb_000227_300

Information

Type -
Description -
Location Contig227: 266850-267881
Sequence    

Annotation

kegg
ID rcu:RCOM_0913980
description hypothetical protein
nr
ID XP_002517210.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3E936
description Probable membrane-associated kinase regulator 1 OS=Arabidopsis thaliana GN=MAKR1 PE=1 SV=1
trembl
ID B9RTZ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0913980 PE=4 SV=1
Gene Ontology
ID GO:0019210
description probable membrane-associated kinase regulator 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 053_A16.ab1: 267225-267993

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_300 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007426_190 0.065862847 - - PREDICTED: uncharacterized protein LOC103325200 [Prunus mume]
3 Hb_000861_060 0.076641185 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
4 Hb_051408_010 0.0853780516 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_009070_010 0.086536473 - - Spermidine synthase, putative [Ricinus communis]
6 Hb_004531_130 0.1067020625 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
7 Hb_097292_010 0.1071219322 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
8 Hb_084812_010 0.1082252908 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
9 Hb_001032_080 0.1149585051 - - Ankyrin repeat protein [Medicago truncatula]
10 Hb_000739_190 0.1163902551 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
11 Hb_000310_040 0.1205624067 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
12 Hb_000684_110 0.120841658 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
13 Hb_007846_030 0.1217330503 - - Uncharacterized protein TCM_021839 [Theobroma cacao]
14 Hb_089040_010 0.1296375524 - - Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]
15 Hb_005731_040 0.1301550093 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
16 Hb_000000_320 0.1326080596 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
17 Hb_000586_110 0.1334398829 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_059275_010 0.1351698697 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
19 Hb_150573_010 0.1362580778 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
20 Hb_001715_060 0.1372837815 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_300 Hb_000227_300 Hb_007426_190 Hb_007426_190 Hb_000227_300--Hb_007426_190 Hb_000861_060 Hb_000861_060 Hb_000227_300--Hb_000861_060 Hb_051408_010 Hb_051408_010 Hb_000227_300--Hb_051408_010 Hb_009070_010 Hb_009070_010 Hb_000227_300--Hb_009070_010 Hb_004531_130 Hb_004531_130 Hb_000227_300--Hb_004531_130 Hb_097292_010 Hb_097292_010 Hb_000227_300--Hb_097292_010 Hb_007846_030 Hb_007846_030 Hb_007426_190--Hb_007846_030 Hb_007426_190--Hb_000861_060 Hb_007426_190--Hb_097292_010 Hb_005731_040 Hb_005731_040 Hb_007426_190--Hb_005731_040 Hb_007426_190--Hb_051408_010 Hb_000861_060--Hb_097292_010 Hb_000586_110 Hb_000586_110 Hb_000861_060--Hb_000586_110 Hb_000861_060--Hb_005731_040 Hb_000310_040 Hb_000310_040 Hb_000861_060--Hb_000310_040 Hb_001032_080 Hb_001032_080 Hb_051408_010--Hb_001032_080 Hb_051408_010--Hb_009070_010 Hb_001333_030 Hb_001333_030 Hb_051408_010--Hb_001333_030 Hb_002626_060 Hb_002626_060 Hb_051408_010--Hb_002626_060 Hb_009070_010--Hb_004531_130 Hb_000000_320 Hb_000000_320 Hb_009070_010--Hb_000000_320 Hb_009070_010--Hb_002626_060 Hb_004112_070 Hb_004112_070 Hb_009070_010--Hb_004112_070 Hb_000742_290 Hb_000742_290 Hb_004531_130--Hb_000742_290 Hb_010690_010 Hb_010690_010 Hb_004531_130--Hb_010690_010 Hb_050898_030 Hb_050898_030 Hb_004531_130--Hb_050898_030 Hb_004531_130--Hb_000861_060 Hb_020738_010 Hb_020738_010 Hb_004531_130--Hb_020738_010 Hb_097292_010--Hb_007846_030 Hb_097292_010--Hb_005731_040 Hb_097292_010--Hb_000586_110 Hb_000878_080 Hb_000878_080 Hb_097292_010--Hb_000878_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.03502 5.43046 9.33205 0.0427098 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0154028 0.943053

CAGE analysis