Hb_005731_040

Information

Type -
Description -
Location Contig5731: 59432-59803
Sequence    

Annotation

kegg
ID vvi:100254900
description glutaredoxin-C1
nr
ID XP_012067297.1
description PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
swissprot
ID Q8LF89
description Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=1 SV=2
trembl
ID A0A067L3M0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26821 PE=4 SV=1
Gene Ontology
ID GO:0009055
description thioredoxin superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49473: 59665-59845
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005731_040 0.0 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
2 Hb_097292_010 0.0655638338 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
3 Hb_000586_110 0.06672156 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
4 Hb_003598_020 0.0685749326 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
5 Hb_026218_010 0.0688923679 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007846_030 0.0884452801 - - Uncharacterized protein TCM_021839 [Theobroma cacao]
7 Hb_000861_060 0.0890953591 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
8 Hb_001775_140 0.0995274301 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
9 Hb_105377_010 0.0998428458 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
10 Hb_000878_080 0.1036621316 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
11 Hb_007426_190 0.1043019165 - - PREDICTED: uncharacterized protein LOC103325200 [Prunus mume]
12 Hb_004880_040 0.1046301347 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
13 Hb_001709_120 0.1055046618 - - hypothetical protein RCOM_1313640 [Ricinus communis]
14 Hb_001025_130 0.1105706048 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
15 Hb_001136_080 0.1110841995 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
16 Hb_084812_010 0.1221947345 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
17 Hb_001856_210 0.1233095361 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
18 Hb_002636_120 0.1252978034 - - Protein bem46, putative [Ricinus communis]
19 Hb_006483_070 0.1260646799 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
20 Hb_011861_130 0.127513399 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]

Gene co-expression network

sample Hb_005731_040 Hb_005731_040 Hb_097292_010 Hb_097292_010 Hb_005731_040--Hb_097292_010 Hb_000586_110 Hb_000586_110 Hb_005731_040--Hb_000586_110 Hb_003598_020 Hb_003598_020 Hb_005731_040--Hb_003598_020 Hb_026218_010 Hb_026218_010 Hb_005731_040--Hb_026218_010 Hb_007846_030 Hb_007846_030 Hb_005731_040--Hb_007846_030 Hb_000861_060 Hb_000861_060 Hb_005731_040--Hb_000861_060 Hb_097292_010--Hb_007846_030 Hb_097292_010--Hb_000861_060 Hb_097292_010--Hb_000586_110 Hb_007426_190 Hb_007426_190 Hb_097292_010--Hb_007426_190 Hb_000878_080 Hb_000878_080 Hb_097292_010--Hb_000878_080 Hb_000586_110--Hb_026218_010 Hb_000586_110--Hb_000861_060 Hb_001025_130 Hb_001025_130 Hb_000586_110--Hb_001025_130 Hb_002636_120 Hb_002636_120 Hb_000586_110--Hb_002636_120 Hb_105377_010 Hb_105377_010 Hb_003598_020--Hb_105377_010 Hb_004880_040 Hb_004880_040 Hb_003598_020--Hb_004880_040 Hb_003598_020--Hb_097292_010 Hb_089040_010 Hb_089040_010 Hb_003598_020--Hb_089040_010 Hb_001856_210 Hb_001856_210 Hb_003598_020--Hb_001856_210 Hb_026218_010--Hb_002636_120 Hb_026218_010--Hb_001025_130 Hb_001775_140 Hb_001775_140 Hb_026218_010--Hb_001775_140 Hb_001709_120 Hb_001709_120 Hb_026218_010--Hb_001709_120 Hb_007846_030--Hb_007426_190 Hb_005694_170 Hb_005694_170 Hb_007846_030--Hb_005694_170 Hb_003376_110 Hb_003376_110 Hb_007846_030--Hb_003376_110 Hb_007846_030--Hb_000878_080 Hb_000861_060--Hb_007426_190 Hb_000227_300 Hb_000227_300 Hb_000861_060--Hb_000227_300 Hb_000310_040 Hb_000310_040 Hb_000861_060--Hb_000310_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.171513 1.44414 2.15536 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.309385

CAGE analysis