Hb_003376_110

Information

Type -
Description -
Location Contig3376: 87436-88438
Sequence    

Annotation

kegg
ID rcu:RCOM_0819290
description hypothetical protein
nr
ID XP_002525169.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SGQ0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0819290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35328: 87477-88487
cDNA
(Sanger)
(ID:Location)		 014_L07.ab1: 87493-88313

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005694_170 0.0721359277 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
3 Hb_003207_210 0.0903552708 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
4 Hb_007846_030 0.0968260002 - - Uncharacterized protein TCM_021839 [Theobroma cacao]
5 Hb_164337_010 0.1031920305 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
6 Hb_000160_190 0.1081938038 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
7 Hb_000056_290 0.1097002498 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001288_040 0.1100759033 - - -
9 Hb_000213_020 0.113277211 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001329_050 0.1165514541 - - conserved hypothetical protein [Ricinus communis]
11 Hb_023640_020 0.1182289123 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001301_310 0.1188376228 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003248_030 0.119862639 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
14 Hb_000933_040 0.1225580584 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
15 Hb_003502_040 0.1283892804 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
16 Hb_097292_010 0.1292077626 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
17 Hb_000283_090 0.131678778 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_004005_060 0.1320902582 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
19 Hb_000878_080 0.1366604241 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
20 Hb_004128_150 0.1367216358 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]

Gene co-expression network

sample Hb_003376_110 Hb_003376_110 Hb_005694_170 Hb_005694_170 Hb_003376_110--Hb_005694_170 Hb_003207_210 Hb_003207_210 Hb_003376_110--Hb_003207_210 Hb_007846_030 Hb_007846_030 Hb_003376_110--Hb_007846_030 Hb_164337_010 Hb_164337_010 Hb_003376_110--Hb_164337_010 Hb_000160_190 Hb_000160_190 Hb_003376_110--Hb_000160_190 Hb_000056_290 Hb_000056_290 Hb_003376_110--Hb_000056_290 Hb_005694_170--Hb_164337_010 Hb_005694_170--Hb_007846_030 Hb_005694_170--Hb_003207_210 Hb_000933_040 Hb_000933_040 Hb_005694_170--Hb_000933_040 Hb_003248_030 Hb_003248_030 Hb_005694_170--Hb_003248_030 Hb_003207_210--Hb_164337_010 Hb_004316_020 Hb_004316_020 Hb_003207_210--Hb_004316_020 Hb_009421_090 Hb_009421_090 Hb_003207_210--Hb_009421_090 Hb_000371_030 Hb_000371_030 Hb_003207_210--Hb_000371_030 Hb_097292_010 Hb_097292_010 Hb_007846_030--Hb_097292_010 Hb_007426_190 Hb_007426_190 Hb_007846_030--Hb_007426_190 Hb_005731_040 Hb_005731_040 Hb_007846_030--Hb_005731_040 Hb_000878_080 Hb_000878_080 Hb_007846_030--Hb_000878_080 Hb_164337_010--Hb_004316_020 Hb_164337_010--Hb_000371_030 Hb_164337_010--Hb_009421_090 Hb_023640_020 Hb_023640_020 Hb_000160_190--Hb_023640_020 Hb_049846_010 Hb_049846_010 Hb_000160_190--Hb_049846_010 Hb_005977_080 Hb_005977_080 Hb_000160_190--Hb_005977_080 Hb_029262_010 Hb_029262_010 Hb_000160_190--Hb_029262_010 Hb_004137_110 Hb_004137_110 Hb_000160_190--Hb_004137_110 Hb_004128_150 Hb_004128_150 Hb_000160_190--Hb_004128_150 Hb_001329_050 Hb_001329_050 Hb_000056_290--Hb_001329_050 Hb_120289_010 Hb_120289_010 Hb_000056_290--Hb_120289_010 Hb_006573_310 Hb_006573_310 Hb_000056_290--Hb_006573_310 Hb_000056_290--Hb_000933_040 Hb_078448_010 Hb_078448_010 Hb_000056_290--Hb_078448_010 Hb_000527_020 Hb_000527_020 Hb_000056_290--Hb_000527_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.1813 95.3773 62.8484 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0818818 0 0 0.0786008 10.1738

CAGE analysis