Hb_005977_080

Information

Type transcription factor
Description TF Family: bZIP
Location Contig5977: 50613-51648
Sequence    

Annotation

kegg
ID rcu:RCOM_1004100
description Transcription factor HY5, putative
nr
ID XP_012084230.1
description PREDICTED: transcription factor HY5-like [Jatropha curcas]
swissprot
ID Q8W191
description Transcription factor HY5-like OS=Arabidopsis thaliana GN=HYH PE=1 SV=1
trembl
ID A0A067K6Y0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19105 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor hy5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50427: 50565-51642
cDNA
(Sanger)
(ID:Location)		 049_C16.ab1: 50565-51510

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005977_080 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
2 Hb_004137_110 0.072101521 - - PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]
3 Hb_000031_240 0.0832083171 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
4 Hb_023640_020 0.0848352062 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000160_190 0.0853374676 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
6 Hb_003207_120 0.0890191902 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
7 Hb_000331_170 0.090246346 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
8 Hb_011310_170 0.0954990456 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
9 Hb_001519_090 0.1000655898 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
10 Hb_000139_040 0.1048336949 - - spermine synthase, putative [Ricinus communis]
11 Hb_000441_130 0.1073588695 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
12 Hb_019973_010 0.1103934365 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
13 Hb_000103_220 0.1106636965 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
14 Hb_004007_050 0.1116106266 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
15 Hb_002894_060 0.1127853841 - - respiratory burst oxidase D [Manihot esculenta]
16 Hb_029262_010 0.1135250407 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
17 Hb_000072_230 0.1136680115 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
18 Hb_001349_050 0.1153081128 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
19 Hb_019516_010 0.1165307749 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
20 Hb_010449_010 0.1169104135 - - l-ascorbate oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005977_080 Hb_005977_080 Hb_004137_110 Hb_004137_110 Hb_005977_080--Hb_004137_110 Hb_000031_240 Hb_000031_240 Hb_005977_080--Hb_000031_240 Hb_023640_020 Hb_023640_020 Hb_005977_080--Hb_023640_020 Hb_000160_190 Hb_000160_190 Hb_005977_080--Hb_000160_190 Hb_003207_120 Hb_003207_120 Hb_005977_080--Hb_003207_120 Hb_000331_170 Hb_000331_170 Hb_005977_080--Hb_000331_170 Hb_010449_010 Hb_010449_010 Hb_004137_110--Hb_010449_010 Hb_000103_220 Hb_000103_220 Hb_004137_110--Hb_000103_220 Hb_004137_110--Hb_023640_020 Hb_000441_130 Hb_000441_130 Hb_004137_110--Hb_000441_130 Hb_017434_010 Hb_017434_010 Hb_004137_110--Hb_017434_010 Hb_000031_240--Hb_000331_170 Hb_004007_050 Hb_004007_050 Hb_000031_240--Hb_004007_050 Hb_001958_040 Hb_001958_040 Hb_000031_240--Hb_001958_040 Hb_004453_160 Hb_004453_160 Hb_000031_240--Hb_004453_160 Hb_011310_170 Hb_011310_170 Hb_000031_240--Hb_011310_170 Hb_023640_020--Hb_000160_190 Hb_004128_150 Hb_004128_150 Hb_023640_020--Hb_004128_150 Hb_023640_020--Hb_004007_050 Hb_000139_040 Hb_000139_040 Hb_023640_020--Hb_000139_040 Hb_049846_010 Hb_049846_010 Hb_000160_190--Hb_049846_010 Hb_029262_010 Hb_029262_010 Hb_000160_190--Hb_029262_010 Hb_000160_190--Hb_004137_110 Hb_000160_190--Hb_004128_150 Hb_004202_030 Hb_004202_030 Hb_003207_120--Hb_004202_030 Hb_001519_090 Hb_001519_090 Hb_003207_120--Hb_001519_090 Hb_002518_040 Hb_002518_040 Hb_003207_120--Hb_002518_040 Hb_003207_120--Hb_004137_110 Hb_000086_470 Hb_000086_470 Hb_003207_120--Hb_000086_470 Hb_031321_020 Hb_031321_020 Hb_000331_170--Hb_031321_020 Hb_007221_020 Hb_007221_020 Hb_000331_170--Hb_007221_020 Hb_005276_140 Hb_005276_140 Hb_000331_170--Hb_005276_140 Hb_019516_010 Hb_019516_010 Hb_000331_170--Hb_019516_010 Hb_000331_170--Hb_004453_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163583 16.747 155.123 109.531 0.19481 0.42318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.887628 0.483183 0.388141 1.1738 48.992

CAGE analysis