Hb_019516_010

Information

Type -
Description -
Location Contig19516: 8361-9688
Sequence    

Annotation

kegg
ID pop:POPTR_0011s08320g
description glycosyl hydrolase family 17 family protein
nr
ID XP_011015994.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
swissprot
ID Q8L868
description Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1
trembl
ID B9N9R5
description Glycosyl hydrolase family 17 family protein OS=Populus trichocarpa GN=POPTR_0011s08320g PE=4 SV=1
Gene Ontology
ID GO:0042973
description glycosyl hydrolase family 17 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19523: 9311-10141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019516_010 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
2 Hb_007221_020 0.0695532594 - - FAD-binding domain-containing family protein [Populus trichocarpa]
3 Hb_000134_130 0.0700992446 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
4 Hb_002894_060 0.0759732118 - - respiratory burst oxidase D [Manihot esculenta]
5 Hb_031321_020 0.0766615076 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
6 Hb_001958_040 0.0774869456 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
7 Hb_004007_050 0.0788172452 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
8 Hb_007922_030 0.0791913267 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
9 Hb_001021_120 0.0794158971 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
10 Hb_000418_110 0.0794700689 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
11 Hb_000331_170 0.080564193 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
12 Hb_001349_050 0.0807670513 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
13 Hb_000073_040 0.0831034815 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
14 Hb_000031_240 0.0873089733 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
15 Hb_004453_160 0.0901362369 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000847_090 0.0912308311 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
17 Hb_000375_220 0.0916741548 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
18 Hb_009486_050 0.0935338 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
19 Hb_001007_020 0.0949831755 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
20 Hb_000009_270 0.09627079 - - Calmodulin, putative [Ricinus communis]

Gene co-expression network

sample Hb_019516_010 Hb_019516_010 Hb_007221_020 Hb_007221_020 Hb_019516_010--Hb_007221_020 Hb_000134_130 Hb_000134_130 Hb_019516_010--Hb_000134_130 Hb_002894_060 Hb_002894_060 Hb_019516_010--Hb_002894_060 Hb_031321_020 Hb_031321_020 Hb_019516_010--Hb_031321_020 Hb_001958_040 Hb_001958_040 Hb_019516_010--Hb_001958_040 Hb_004007_050 Hb_004007_050 Hb_019516_010--Hb_004007_050 Hb_007221_020--Hb_031321_020 Hb_007922_030 Hb_007922_030 Hb_007221_020--Hb_007922_030 Hb_031022_030 Hb_031022_030 Hb_007221_020--Hb_031022_030 Hb_132840_190 Hb_132840_190 Hb_007221_020--Hb_132840_190 Hb_004453_160 Hb_004453_160 Hb_007221_020--Hb_004453_160 Hb_152910_050 Hb_152910_050 Hb_000134_130--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_000134_130--Hb_098315_060 Hb_040852_010 Hb_040852_010 Hb_000134_130--Hb_040852_010 Hb_003894_110 Hb_003894_110 Hb_000134_130--Hb_003894_110 Hb_001021_120 Hb_001021_120 Hb_000134_130--Hb_001021_120 Hb_003376_020 Hb_003376_020 Hb_000134_130--Hb_003376_020 Hb_001349_050 Hb_001349_050 Hb_002894_060--Hb_001349_050 Hb_001007_020 Hb_001007_020 Hb_002894_060--Hb_001007_020 Hb_000418_110 Hb_000418_110 Hb_002894_060--Hb_000418_110 Hb_002894_060--Hb_000134_130 Hb_001623_250 Hb_001623_250 Hb_002894_060--Hb_001623_250 Hb_031321_020--Hb_031022_030 Hb_031321_020--Hb_001021_120 Hb_031321_020--Hb_007922_030 Hb_031321_020--Hb_000134_130 Hb_000331_170 Hb_000331_170 Hb_031321_020--Hb_000331_170 Hb_000073_040 Hb_000073_040 Hb_001958_040--Hb_000073_040 Hb_000397_060 Hb_000397_060 Hb_001958_040--Hb_000397_060 Hb_001958_040--Hb_004007_050 Hb_001301_310 Hb_001301_310 Hb_001958_040--Hb_001301_310 Hb_004128_150 Hb_004128_150 Hb_001958_040--Hb_004128_150 Hb_004007_050--Hb_004128_150 Hb_004007_050--Hb_004453_160 Hb_023640_020 Hb_023640_020 Hb_004007_050--Hb_023640_020 Hb_000031_240 Hb_000031_240 Hb_004007_050--Hb_000031_240 Hb_011310_170 Hb_011310_170 Hb_004007_050--Hb_011310_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0527839 1.72392 1.29735 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0403105 0.622815

CAGE analysis