Hb_001958_040

Information

Type -
Description -
Location Contig1958: 14511-15302
Sequence    

Annotation

kegg
ID rcu:RCOM_1371750
description hypothetical protein
nr
ID XP_012081132.1
description PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K279
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16984 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001958_040 0.0 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
2 Hb_000073_040 0.044333587 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
3 Hb_000397_060 0.0524760321 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
4 Hb_004007_050 0.0585151698 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
5 Hb_001301_310 0.0700796409 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004128_150 0.0760588171 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
7 Hb_019516_010 0.0774869456 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
8 Hb_000031_240 0.0779296401 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
9 Hb_049846_010 0.0807137092 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
10 Hb_004453_160 0.0901559804 - - conserved hypothetical protein [Ricinus communis]
11 Hb_023640_020 0.0906035829 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000010_320 0.0913914808 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
13 Hb_002045_160 0.0920979886 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
14 Hb_000258_400 0.0934050404 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
15 Hb_000139_040 0.0935451099 - - spermine synthase, putative [Ricinus communis]
16 Hb_001349_050 0.0941843059 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
17 Hb_072952_010 0.0941989983 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
18 Hb_001258_130 0.0953477329 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
19 Hb_011310_170 0.0961083879 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
20 Hb_005357_140 0.0978565341 - - Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001958_040 Hb_001958_040 Hb_000073_040 Hb_000073_040 Hb_001958_040--Hb_000073_040 Hb_000397_060 Hb_000397_060 Hb_001958_040--Hb_000397_060 Hb_004007_050 Hb_004007_050 Hb_001958_040--Hb_004007_050 Hb_001301_310 Hb_001301_310 Hb_001958_040--Hb_001301_310 Hb_004128_150 Hb_004128_150 Hb_001958_040--Hb_004128_150 Hb_019516_010 Hb_019516_010 Hb_001958_040--Hb_019516_010 Hb_000073_040--Hb_000397_060 Hb_000258_400 Hb_000258_400 Hb_000073_040--Hb_000258_400 Hb_072952_010 Hb_072952_010 Hb_000073_040--Hb_072952_010 Hb_072620_010 Hb_072620_010 Hb_000073_040--Hb_072620_010 Hb_002045_160 Hb_002045_160 Hb_000073_040--Hb_002045_160 Hb_005357_140 Hb_005357_140 Hb_000397_060--Hb_005357_140 Hb_000397_060--Hb_072952_010 Hb_000010_320 Hb_000010_320 Hb_000397_060--Hb_000010_320 Hb_000397_060--Hb_001301_310 Hb_004007_050--Hb_004128_150 Hb_004453_160 Hb_004453_160 Hb_004007_050--Hb_004453_160 Hb_023640_020 Hb_023640_020 Hb_004007_050--Hb_023640_020 Hb_000031_240 Hb_000031_240 Hb_004007_050--Hb_000031_240 Hb_011310_170 Hb_011310_170 Hb_004007_050--Hb_011310_170 Hb_001301_310--Hb_004128_150 Hb_002053_100 Hb_002053_100 Hb_001301_310--Hb_002053_100 Hb_001301_310--Hb_000073_040 Hb_001301_310--Hb_005357_140 Hb_006614_020 Hb_006614_020 Hb_004128_150--Hb_006614_020 Hb_004128_150--Hb_023640_020 Hb_004128_150--Hb_011310_170 Hb_004128_150--Hb_004453_160 Hb_007221_020 Hb_007221_020 Hb_019516_010--Hb_007221_020 Hb_000134_130 Hb_000134_130 Hb_019516_010--Hb_000134_130 Hb_002894_060 Hb_002894_060 Hb_019516_010--Hb_002894_060 Hb_031321_020 Hb_031321_020 Hb_019516_010--Hb_031321_020 Hb_019516_010--Hb_004007_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.224295 8.24221 4.40881 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0870984 2.04899

CAGE analysis