Hb_005357_140

Information

Type -
Description -
Location Contig5357: 115182-116487
Sequence    

Annotation

kegg
ID rcu:RCOM_0905690
description Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative (EC:2.4.1.207)
nr
ID XP_002518528.1
description Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis]
swissprot
ID Q8L9A9
description Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=2
trembl
ID B9RXQ9
description Xyloglucan endotransglucosylase/hydrolase OS=Ricinus communis GN=RCOM_0905690 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_140 0.0 - - Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis]
2 Hb_000397_060 0.071496313 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
3 Hb_000139_040 0.0884416773 - - spermine synthase, putative [Ricinus communis]
4 Hb_001301_310 0.093332548 - - conserved hypothetical protein [Ricinus communis]
5 Hb_049846_010 0.0974913561 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
6 Hb_001958_040 0.0978565341 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
7 Hb_000283_090 0.1016341233 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_023640_020 0.104478021 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000010_320 0.1046564021 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
10 Hb_004007_050 0.1159881327 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
11 Hb_000073_040 0.1191569011 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
12 Hb_059832_010 0.1199956069 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
13 Hb_000083_280 0.120796637 - - copper ion binding protein, putative [Ricinus communis]
14 Hb_002045_160 0.1214900801 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
15 Hb_000031_240 0.1235811063 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_001258_130 0.1244131489 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
17 Hb_158845_010 0.1257957358 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
18 Hb_004128_150 0.1258605167 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
19 Hb_002121_030 0.1271219528 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
20 Hb_000160_190 0.1281917836 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]

Gene co-expression network

sample Hb_005357_140 Hb_005357_140 Hb_000397_060 Hb_000397_060 Hb_005357_140--Hb_000397_060 Hb_000139_040 Hb_000139_040 Hb_005357_140--Hb_000139_040 Hb_001301_310 Hb_001301_310 Hb_005357_140--Hb_001301_310 Hb_049846_010 Hb_049846_010 Hb_005357_140--Hb_049846_010 Hb_001958_040 Hb_001958_040 Hb_005357_140--Hb_001958_040 Hb_000283_090 Hb_000283_090 Hb_005357_140--Hb_000283_090 Hb_000397_060--Hb_001958_040 Hb_000073_040 Hb_000073_040 Hb_000397_060--Hb_000073_040 Hb_072952_010 Hb_072952_010 Hb_000397_060--Hb_072952_010 Hb_000010_320 Hb_000010_320 Hb_000397_060--Hb_000010_320 Hb_000397_060--Hb_001301_310 Hb_000139_040--Hb_049846_010 Hb_001258_130 Hb_001258_130 Hb_000139_040--Hb_001258_130 Hb_129956_010 Hb_129956_010 Hb_000139_040--Hb_129956_010 Hb_023640_020 Hb_023640_020 Hb_000139_040--Hb_023640_020 Hb_000031_240 Hb_000031_240 Hb_000139_040--Hb_000031_240 Hb_001301_310--Hb_001958_040 Hb_004128_150 Hb_004128_150 Hb_001301_310--Hb_004128_150 Hb_002053_100 Hb_002053_100 Hb_001301_310--Hb_002053_100 Hb_001301_310--Hb_000073_040 Hb_000160_190 Hb_000160_190 Hb_049846_010--Hb_000160_190 Hb_049846_010--Hb_129956_010 Hb_049846_010--Hb_001958_040 Hb_004007_050 Hb_004007_050 Hb_049846_010--Hb_004007_050 Hb_049846_010--Hb_023640_020 Hb_001958_040--Hb_000073_040 Hb_001958_040--Hb_004007_050 Hb_001958_040--Hb_004128_150 Hb_019516_010 Hb_019516_010 Hb_001958_040--Hb_019516_010 Hb_000283_090--Hb_001301_310 Hb_000083_280 Hb_000083_280 Hb_000283_090--Hb_000083_280 Hb_004422_030 Hb_004422_030 Hb_000283_090--Hb_004422_030 Hb_000527_030 Hb_000527_030 Hb_000283_090--Hb_000527_030 Hb_004003_020 Hb_004003_020 Hb_000283_090--Hb_004003_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0811875 0.151104 3.94788 1.67722 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0168177 0.767117

CAGE analysis