Hb_002053_100

Information

Type -
Description -
Location Contig2053: 108390-117093
Sequence    

Annotation

kegg
ID rcu:RCOM_0237720
description actin binding protein, putative
nr
ID XP_002533785.1
description actin binding protein, putative [Ricinus communis]
swissprot
ID Q9LI74
description Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1
trembl
ID B9T6B3
description Actin binding protein, putative OS=Ricinus communis GN=RCOM_0237720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21171: 108179-114349 , PASA_asmbl_21172: 115003-116351
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_100 0.0 - - actin binding protein, putative [Ricinus communis]
2 Hb_001439_240 0.0553552296 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
3 Hb_000830_010 0.060354763 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005276_190 0.0645258777 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
5 Hb_000340_550 0.06995677 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
6 Hb_001349_050 0.081890465 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
7 Hb_001301_310 0.0868688024 - - conserved hypothetical protein [Ricinus communis]
8 Hb_181744_010 0.0886476052 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
9 Hb_001623_250 0.0902508697 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
10 Hb_005288_090 0.09689557 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
11 Hb_000116_050 0.0995864285 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
12 Hb_012395_040 0.100003382 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005116_120 0.1000101131 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
14 Hb_001958_040 0.1010240984 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
15 Hb_000073_040 0.1016543867 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
16 Hb_002203_010 0.1022632644 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
17 Hb_003777_260 0.1029164233 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
18 Hb_009113_060 0.104281773 - - conserved hypothetical protein [Ricinus communis]
19 Hb_016898_020 0.1043936174 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
20 Hb_002045_160 0.1047259683 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]

Gene co-expression network

sample Hb_002053_100 Hb_002053_100 Hb_001439_240 Hb_001439_240 Hb_002053_100--Hb_001439_240 Hb_000830_010 Hb_000830_010 Hb_002053_100--Hb_000830_010 Hb_005276_190 Hb_005276_190 Hb_002053_100--Hb_005276_190 Hb_000340_550 Hb_000340_550 Hb_002053_100--Hb_000340_550 Hb_001349_050 Hb_001349_050 Hb_002053_100--Hb_001349_050 Hb_001301_310 Hb_001301_310 Hb_002053_100--Hb_001301_310 Hb_001439_240--Hb_000830_010 Hb_001439_240--Hb_000340_550 Hb_181744_010 Hb_181744_010 Hb_001439_240--Hb_181744_010 Hb_001439_240--Hb_005276_190 Hb_003777_260 Hb_003777_260 Hb_001439_240--Hb_003777_260 Hb_000830_010--Hb_005276_190 Hb_000830_010--Hb_000340_550 Hb_000576_140 Hb_000576_140 Hb_000830_010--Hb_000576_140 Hb_000830_010--Hb_181744_010 Hb_005276_190--Hb_001349_050 Hb_005276_190--Hb_000576_140 Hb_002203_010 Hb_002203_010 Hb_005276_190--Hb_002203_010 Hb_000340_550--Hb_003777_260 Hb_000340_550--Hb_181744_010 Hb_005288_090 Hb_005288_090 Hb_000340_550--Hb_005288_090 Hb_005116_120 Hb_005116_120 Hb_000340_550--Hb_005116_120 Hb_002894_060 Hb_002894_060 Hb_001349_050--Hb_002894_060 Hb_001623_250 Hb_001623_250 Hb_001349_050--Hb_001623_250 Hb_002818_060 Hb_002818_060 Hb_001349_050--Hb_002818_060 Hb_003006_070 Hb_003006_070 Hb_001349_050--Hb_003006_070 Hb_019516_010 Hb_019516_010 Hb_001349_050--Hb_019516_010 Hb_001958_040 Hb_001958_040 Hb_001301_310--Hb_001958_040 Hb_000397_060 Hb_000397_060 Hb_001301_310--Hb_000397_060 Hb_004128_150 Hb_004128_150 Hb_001301_310--Hb_004128_150 Hb_000073_040 Hb_000073_040 Hb_001301_310--Hb_000073_040 Hb_005357_140 Hb_005357_140 Hb_001301_310--Hb_005357_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0966053 2.66563 1.49812 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.128777 0.406652

CAGE analysis