Hb_003006_070

Information

Type -
Description -
Location Contig3006: 101728-103346
Sequence    

Annotation

kegg
ID rcu:RCOM_0979420
description Aquaporin PIP2.7, putative
nr
ID ACB87734.1
description aquaporin [Manihot esculenta]
swissprot
ID P93004
description Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2
trembl
ID B2M0U5
description Aquaporin OS=Manihot esculenta GN=AQP PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable aquaporin pip2-8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31693: 101992-103393
cDNA
(Sanger)
(ID:Location)		 006_A20.ab1: 102288-103348 , 014_G03.ab1: 102362-103351 , 016_N18.ab1: 102303-103351 , 025_C16.ab1: 102265-103393 , 026_F22.ab1: 101992-102083 , 030_H03.ab1: 102471-103351 , 038_I05.ab1: 101992-102083 , 040_K11.ab1: 102261-103351 , 043_H23.ab1: 102262-103351 , 049_L08.ab1: 102288-103351

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003006_070 0.0 - - aquaporin [Manihot esculenta]
2 Hb_001623_250 0.0490282565 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
3 Hb_003085_070 0.0584975222 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
4 Hb_000375_220 0.0653763322 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
5 Hb_002836_110 0.0750734481 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
6 Hb_006614_020 0.0775979239 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
7 Hb_001349_050 0.0783797431 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
8 Hb_002030_010 0.0859579023 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
9 Hb_004410_020 0.0903363672 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
10 Hb_004128_150 0.0922117184 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
11 Hb_000073_040 0.093789355 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
12 Hb_000127_240 0.0963839352 - - SAUR39 [Populus tomentosa]
13 Hb_003185_040 0.09679014 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
14 Hb_002894_060 0.099126989 - - respiratory burst oxidase D [Manihot esculenta]
15 Hb_007760_060 0.102766576 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
16 Hb_019516_010 0.1082052562 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
17 Hb_001958_040 0.1082527685 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
18 Hb_072620_010 0.1097092718 - - PREDICTED: receptor-like protein kinase 2 [Cucumis melo]
19 Hb_004007_050 0.1117093366 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
20 Hb_002053_100 0.113935924 - - actin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003006_070 Hb_003006_070 Hb_001623_250 Hb_001623_250 Hb_003006_070--Hb_001623_250 Hb_003085_070 Hb_003085_070 Hb_003006_070--Hb_003085_070 Hb_000375_220 Hb_000375_220 Hb_003006_070--Hb_000375_220 Hb_002836_110 Hb_002836_110 Hb_003006_070--Hb_002836_110 Hb_006614_020 Hb_006614_020 Hb_003006_070--Hb_006614_020 Hb_001349_050 Hb_001349_050 Hb_003006_070--Hb_001349_050 Hb_001623_250--Hb_001349_050 Hb_001623_250--Hb_002836_110 Hb_001623_250--Hb_003085_070 Hb_002894_060 Hb_002894_060 Hb_001623_250--Hb_002894_060 Hb_002818_060 Hb_002818_060 Hb_001623_250--Hb_002818_060 Hb_003185_040 Hb_003185_040 Hb_003085_070--Hb_003185_040 Hb_003085_070--Hb_002836_110 Hb_003085_070--Hb_006614_020 Hb_003085_070--Hb_000375_220 Hb_002030_010 Hb_002030_010 Hb_000375_220--Hb_002030_010 Hb_000127_240 Hb_000127_240 Hb_000375_220--Hb_000127_240 Hb_000375_220--Hb_006614_020 Hb_000847_090 Hb_000847_090 Hb_000375_220--Hb_000847_090 Hb_009847_010 Hb_009847_010 Hb_000375_220--Hb_009847_010 Hb_009113_020 Hb_009113_020 Hb_002836_110--Hb_009113_020 Hb_002836_110--Hb_001349_050 Hb_000538_290 Hb_000538_290 Hb_002836_110--Hb_000538_290 Hb_006614_020--Hb_000127_240 Hb_006614_020--Hb_002030_010 Hb_004128_150 Hb_004128_150 Hb_006614_020--Hb_004128_150 Hb_007760_060 Hb_007760_060 Hb_006614_020--Hb_007760_060 Hb_004007_050 Hb_004007_050 Hb_006614_020--Hb_004007_050 Hb_001349_050--Hb_002894_060 Hb_001349_050--Hb_002818_060 Hb_019516_010 Hb_019516_010 Hb_001349_050--Hb_019516_010 Hb_002053_100 Hb_002053_100 Hb_001349_050--Hb_002053_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105635 5.0303 524.434 414.69 0.260988 0.388338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.126112 0 0 7.83286 97.4894

CAGE analysis