Hb_003185_040

Information

Type -
Description -
Location Contig3185: 20164-21702
Sequence    

Annotation

kegg
ID tcc:TCM_038359
description 3-ketoacyl-CoA synthase
nr
ID XP_011026502.1
description PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
swissprot
ID O48780
description 3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=2 SV=1
trembl
ID A0A061GNG8
description 3-ketoacyl-CoA synthase OS=Theobroma cacao GN=TCM_038359 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33594: 19788-19931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003185_040 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
2 Hb_004880_040 0.0667269138 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
3 Hb_000059_190 0.0806808817 - - PREDICTED: uncharacterized protein LOC105121874 [Populus euphratica]
4 Hb_003085_070 0.0844275067 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
5 Hb_001123_330 0.0853963593 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
6 Hb_000336_010 0.0860742142 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
7 Hb_105377_010 0.0874465667 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
8 Hb_004724_280 0.0919442608 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003006_070 0.09679014 - - aquaporin [Manihot esculenta]
10 Hb_001856_210 0.0991501997 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
11 Hb_003680_180 0.1010024209 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
12 Hb_002836_110 0.1039713698 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
13 Hb_000175_080 0.1046629506 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
14 Hb_005353_010 0.1070657369 - - Pectinesterase-1 precursor, putative [Ricinus communis]
15 Hb_003598_020 0.1155489987 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
16 Hb_123713_010 0.1157266989 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_000134_300 0.1161592217 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000445_260 0.1164348602 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
19 Hb_000792_100 0.119078174 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
20 Hb_007474_010 0.1203326811 - - vacuolar invertase [Manihot esculenta]

Gene co-expression network

sample Hb_003185_040 Hb_003185_040 Hb_004880_040 Hb_004880_040 Hb_003185_040--Hb_004880_040 Hb_000059_190 Hb_000059_190 Hb_003185_040--Hb_000059_190 Hb_003085_070 Hb_003085_070 Hb_003185_040--Hb_003085_070 Hb_001123_330 Hb_001123_330 Hb_003185_040--Hb_001123_330 Hb_000336_010 Hb_000336_010 Hb_003185_040--Hb_000336_010 Hb_105377_010 Hb_105377_010 Hb_003185_040--Hb_105377_010 Hb_004880_040--Hb_105377_010 Hb_003598_020 Hb_003598_020 Hb_004880_040--Hb_003598_020 Hb_001856_210 Hb_001856_210 Hb_004880_040--Hb_001856_210 Hb_000878_080 Hb_000878_080 Hb_004880_040--Hb_000878_080 Hb_004880_040--Hb_003085_070 Hb_000802_070 Hb_000802_070 Hb_000059_190--Hb_000802_070 Hb_000134_300 Hb_000134_300 Hb_000059_190--Hb_000134_300 Hb_003680_180 Hb_003680_180 Hb_000059_190--Hb_003680_180 Hb_000175_080 Hb_000175_080 Hb_000059_190--Hb_000175_080 Hb_000059_190--Hb_000336_010 Hb_003006_070 Hb_003006_070 Hb_003085_070--Hb_003006_070 Hb_001623_250 Hb_001623_250 Hb_003085_070--Hb_001623_250 Hb_002836_110 Hb_002836_110 Hb_003085_070--Hb_002836_110 Hb_006614_020 Hb_006614_020 Hb_003085_070--Hb_006614_020 Hb_000375_220 Hb_000375_220 Hb_003085_070--Hb_000375_220 Hb_004724_280 Hb_004724_280 Hb_001123_330--Hb_004724_280 Hb_001123_330--Hb_000336_010 Hb_001123_330--Hb_000175_080 Hb_001123_330--Hb_003680_180 Hb_007474_010 Hb_007474_010 Hb_001123_330--Hb_007474_010 Hb_000336_010--Hb_000175_080 Hb_000336_010--Hb_004724_280 Hb_003420_010 Hb_003420_010 Hb_000336_010--Hb_003420_010 Hb_000336_010--Hb_105377_010 Hb_105377_010--Hb_003598_020 Hb_105377_010--Hb_004724_280 Hb_005731_040 Hb_005731_040 Hb_105377_010--Hb_005731_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0397401 3.49072 3.68969 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0190373 0.39967

CAGE analysis