Hb_003680_180

Information

Type transcription factor
Description TF Family: HB
Location Contig3680: 192524-193678
Sequence    

Annotation

kegg
ID rcu:RCOM_0840490
description homeobox protein, putative
nr
ID XP_002528635.1
description homeobox protein, putative [Ricinus communis]
swissprot
ID Q9LZR0
description Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=2
trembl
ID B9SRL6
description Homeobox protein, putative OS=Ricinus communis GN=RCOM_0840490 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-51

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37844: 193134-193971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_180 0.0 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
2 Hb_000059_190 0.0682102573 - - PREDICTED: uncharacterized protein LOC105121874 [Populus euphratica]
3 Hb_000134_300 0.0702224966 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_002790_010 0.0737199594 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
5 Hb_000802_070 0.081565456 - - PREDICTED: LOW QUALITY PROTEIN: eugenol synthase 1-like [Jatropha curcas]
6 Hb_000175_080 0.0836979797 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
7 Hb_001123_330 0.0853928959 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
8 Hb_004774_080 0.0952648405 - - conserved hypothetical protein [Ricinus communis]
9 Hb_034420_010 0.1009675124 - - glutathione S-transferase [Caragana korshinskii]
10 Hb_003185_040 0.1010024209 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
11 Hb_000336_010 0.1032449544 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
12 Hb_004724_280 0.1104460384 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000138_120 0.11622738 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000053_140 0.1208129951 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004092_020 0.1209169844 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
16 Hb_002284_140 0.12093743 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
17 Hb_005663_020 0.1209955278 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
18 Hb_001645_080 0.121029081 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
19 Hb_001488_170 0.1211763848 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
20 Hb_000556_210 0.1213135086 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]

Gene co-expression network

sample Hb_003680_180 Hb_003680_180 Hb_000059_190 Hb_000059_190 Hb_003680_180--Hb_000059_190 Hb_000134_300 Hb_000134_300 Hb_003680_180--Hb_000134_300 Hb_002790_010 Hb_002790_010 Hb_003680_180--Hb_002790_010 Hb_000802_070 Hb_000802_070 Hb_003680_180--Hb_000802_070 Hb_000175_080 Hb_000175_080 Hb_003680_180--Hb_000175_080 Hb_001123_330 Hb_001123_330 Hb_003680_180--Hb_001123_330 Hb_000059_190--Hb_000802_070 Hb_000059_190--Hb_000134_300 Hb_003185_040 Hb_003185_040 Hb_000059_190--Hb_003185_040 Hb_000059_190--Hb_000175_080 Hb_000336_010 Hb_000336_010 Hb_000059_190--Hb_000336_010 Hb_000134_300--Hb_000802_070 Hb_034420_010 Hb_034420_010 Hb_000134_300--Hb_034420_010 Hb_000134_300--Hb_002790_010 Hb_004774_080 Hb_004774_080 Hb_000134_300--Hb_004774_080 Hb_006469_100 Hb_006469_100 Hb_002790_010--Hb_006469_100 Hb_141016_010 Hb_141016_010 Hb_002790_010--Hb_141016_010 Hb_000574_060 Hb_000574_060 Hb_002790_010--Hb_000574_060 Hb_027802_030 Hb_027802_030 Hb_002790_010--Hb_027802_030 Hb_004375_090 Hb_004375_090 Hb_002790_010--Hb_004375_090 Hb_000802_070--Hb_002790_010 Hb_000802_070--Hb_034420_010 Hb_000010_430 Hb_000010_430 Hb_000802_070--Hb_000010_430 Hb_000175_080--Hb_000336_010 Hb_004724_280 Hb_004724_280 Hb_000175_080--Hb_004724_280 Hb_000175_080--Hb_001123_330 Hb_003420_010 Hb_003420_010 Hb_000175_080--Hb_003420_010 Hb_001123_330--Hb_004724_280 Hb_001123_330--Hb_000336_010 Hb_001123_330--Hb_003185_040 Hb_007474_010 Hb_007474_010 Hb_001123_330--Hb_007474_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.94868 2.37098 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0270995 0.131006

CAGE analysis