Hb_000059_190

Information

Type -
Description -
Location Contig59: 188783-189370
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10780g
description POPTRDRAFT_762567; hypothetical protein
nr
ID XP_011019026.1
description PREDICTED: uncharacterized protein LOC105121874 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HDA2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s10780g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_190 0.0 - - PREDICTED: uncharacterized protein LOC105121874 [Populus euphratica]
2 Hb_000802_070 0.0540466511 - - PREDICTED: LOW QUALITY PROTEIN: eugenol synthase 1-like [Jatropha curcas]
3 Hb_000134_300 0.0674417599 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_003680_180 0.0682102573 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_003185_040 0.0806808817 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
6 Hb_000175_080 0.0862354997 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
7 Hb_000336_010 0.0937321199 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
8 Hb_002790_010 0.0962168096 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_057575_010 0.1103331832 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001123_330 0.1106861759 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
11 Hb_002030_010 0.114521998 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
12 Hb_004724_280 0.1164640226 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003085_070 0.1167820635 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
14 Hb_003006_070 0.1185168166 - - aquaporin [Manihot esculenta]
15 Hb_034420_010 0.1197909257 - - glutathione S-transferase [Caragana korshinskii]
16 Hb_004774_080 0.1243119845 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004880_040 0.1288746397 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
18 Hb_007760_060 0.1300910861 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
19 Hb_000640_290 0.130539404 - - basic helix-loop-helix protein [Populus simonii x Populus nigra]
20 Hb_006614_020 0.1309703616 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_000059_190 Hb_000059_190 Hb_000802_070 Hb_000802_070 Hb_000059_190--Hb_000802_070 Hb_000134_300 Hb_000134_300 Hb_000059_190--Hb_000134_300 Hb_003680_180 Hb_003680_180 Hb_000059_190--Hb_003680_180 Hb_003185_040 Hb_003185_040 Hb_000059_190--Hb_003185_040 Hb_000175_080 Hb_000175_080 Hb_000059_190--Hb_000175_080 Hb_000336_010 Hb_000336_010 Hb_000059_190--Hb_000336_010 Hb_000802_070--Hb_000134_300 Hb_000802_070--Hb_003680_180 Hb_002790_010 Hb_002790_010 Hb_000802_070--Hb_002790_010 Hb_034420_010 Hb_034420_010 Hb_000802_070--Hb_034420_010 Hb_000010_430 Hb_000010_430 Hb_000802_070--Hb_000010_430 Hb_000134_300--Hb_003680_180 Hb_000134_300--Hb_034420_010 Hb_000134_300--Hb_002790_010 Hb_004774_080 Hb_004774_080 Hb_000134_300--Hb_004774_080 Hb_003680_180--Hb_002790_010 Hb_003680_180--Hb_000175_080 Hb_001123_330 Hb_001123_330 Hb_003680_180--Hb_001123_330 Hb_004880_040 Hb_004880_040 Hb_003185_040--Hb_004880_040 Hb_003085_070 Hb_003085_070 Hb_003185_040--Hb_003085_070 Hb_003185_040--Hb_001123_330 Hb_003185_040--Hb_000336_010 Hb_105377_010 Hb_105377_010 Hb_003185_040--Hb_105377_010 Hb_000175_080--Hb_000336_010 Hb_004724_280 Hb_004724_280 Hb_000175_080--Hb_004724_280 Hb_000175_080--Hb_001123_330 Hb_003420_010 Hb_003420_010 Hb_000175_080--Hb_003420_010 Hb_000336_010--Hb_004724_280 Hb_000336_010--Hb_001123_330 Hb_000336_010--Hb_003420_010 Hb_000336_010--Hb_105377_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.89122 1.5838 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.157758

CAGE analysis