Hb_003598_020

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig3598: 62351-63725
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25410g
description POPTRDRAFT_802380; zinc finger family protein
nr
ID XP_012077373.1
description PREDICTED: GATA transcription factor 12 [Jatropha curcas]
swissprot
ID P69781
description GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1
trembl
ID A0A067KQS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07730 PE=4 SV=1
Gene Ontology
ID GO:0005634
description gata transcription factor 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37083: 62934-63409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003598_020 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
2 Hb_105377_010 0.0495060507 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
3 Hb_005731_040 0.0685749326 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
4 Hb_004880_040 0.0846199086 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
5 Hb_097292_010 0.1003705544 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
6 Hb_089040_010 0.1015732305 - - Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]
7 Hb_001856_210 0.1128534571 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
8 Hb_007846_030 0.1132705512 - - Uncharacterized protein TCM_021839 [Theobroma cacao]
9 Hb_001775_140 0.1135090523 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
10 Hb_001136_080 0.1140228566 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
11 Hb_003185_040 0.1155489987 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
12 Hb_000878_080 0.1159072137 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
13 Hb_000445_260 0.1177249496 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
14 Hb_003464_010 0.1215367905 - - conserved hypothetical protein [Ricinus communis]
15 Hb_026218_010 0.1220175632 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004724_280 0.1245973582 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000861_060 0.1250343755 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
18 Hb_002078_070 0.1267816845 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000336_010 0.1270810332 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
20 Hb_087717_010 0.1296350077 - - hypothetical protein JCGZ_01246 [Jatropha curcas]

Gene co-expression network

sample Hb_003598_020 Hb_003598_020 Hb_105377_010 Hb_105377_010 Hb_003598_020--Hb_105377_010 Hb_005731_040 Hb_005731_040 Hb_003598_020--Hb_005731_040 Hb_004880_040 Hb_004880_040 Hb_003598_020--Hb_004880_040 Hb_097292_010 Hb_097292_010 Hb_003598_020--Hb_097292_010 Hb_089040_010 Hb_089040_010 Hb_003598_020--Hb_089040_010 Hb_001856_210 Hb_001856_210 Hb_003598_020--Hb_001856_210 Hb_105377_010--Hb_004880_040 Hb_003185_040 Hb_003185_040 Hb_105377_010--Hb_003185_040 Hb_000336_010 Hb_000336_010 Hb_105377_010--Hb_000336_010 Hb_004724_280 Hb_004724_280 Hb_105377_010--Hb_004724_280 Hb_105377_010--Hb_005731_040 Hb_005731_040--Hb_097292_010 Hb_000586_110 Hb_000586_110 Hb_005731_040--Hb_000586_110 Hb_026218_010 Hb_026218_010 Hb_005731_040--Hb_026218_010 Hb_007846_030 Hb_007846_030 Hb_005731_040--Hb_007846_030 Hb_000861_060 Hb_000861_060 Hb_005731_040--Hb_000861_060 Hb_004880_040--Hb_003185_040 Hb_004880_040--Hb_001856_210 Hb_000878_080 Hb_000878_080 Hb_004880_040--Hb_000878_080 Hb_003085_070 Hb_003085_070 Hb_004880_040--Hb_003085_070 Hb_097292_010--Hb_007846_030 Hb_097292_010--Hb_000861_060 Hb_097292_010--Hb_000586_110 Hb_007426_190 Hb_007426_190 Hb_097292_010--Hb_007426_190 Hb_097292_010--Hb_000878_080 Hb_002970_030 Hb_002970_030 Hb_089040_010--Hb_002970_030 Hb_016911_010 Hb_016911_010 Hb_089040_010--Hb_016911_010 Hb_001136_080 Hb_001136_080 Hb_089040_010--Hb_001136_080 Hb_039075_010 Hb_039075_010 Hb_089040_010--Hb_039075_010 Hb_000310_040 Hb_000310_040 Hb_089040_010--Hb_000310_040 Hb_000445_260 Hb_000445_260 Hb_001856_210--Hb_000445_260 Hb_174639_010 Hb_174639_010 Hb_001856_210--Hb_174639_010 Hb_010080_050 Hb_010080_050 Hb_001856_210--Hb_010080_050 Hb_001856_210--Hb_000878_080 Hb_009113_020 Hb_009113_020 Hb_001856_210--Hb_009113_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0515904 0.641241 0.947331 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0717733

CAGE analysis