Hb_000586_110

Information

Type -
Description -
Location Contig586: 259308-261668
Sequence    

Annotation

kegg
ID rcu:RCOM_0198410
description trehalose-6-phosphate synthase, putative (EC:3.1.3.12)
nr
ID XP_002533145.1
description trehalose-6-phosphate synthase, putative [Ricinus communis]
swissprot
ID Q5HZ05
description Probable trehalose-phosphate phosphatase J OS=Arabidopsis thaliana GN=TPPJ PE=1 SV=1
trembl
ID B9T4H6
description Trehalose 6-phosphate phosphatase OS=Ricinus communis GN=RCOM_0198410 PE=3 SV=1
Gene Ontology
ID GO:0004805
description probable trehalose-phosphate phosphatase j

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49978: 259324-261551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000586_110 0.0 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
2 Hb_026218_010 0.066307975 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005731_040 0.06672156 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
4 Hb_097292_010 0.0776341345 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
5 Hb_000861_060 0.079811751 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
6 Hb_001025_130 0.0821959767 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
7 Hb_002636_120 0.087711017 - - Protein bem46, putative [Ricinus communis]
8 Hb_059275_010 0.0902669572 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
9 Hb_001709_120 0.092925763 - - hypothetical protein RCOM_1313640 [Ricinus communis]
10 Hb_040852_010 0.0998253053 - - conserved hypothetical protein [Ricinus communis]
11 Hb_084812_010 0.1045438379 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
12 Hb_020738_010 0.1052764232 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
13 Hb_007846_030 0.1093432869 - - Uncharacterized protein TCM_021839 [Theobroma cacao]
14 Hb_007426_190 0.1100589757 - - PREDICTED: uncharacterized protein LOC103325200 [Prunus mume]
15 Hb_050898_030 0.1112054219 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000878_080 0.1115464018 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
17 Hb_011618_110 0.1119810696 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
18 Hb_001975_110 0.1145009766 - - -
19 Hb_000003_370 0.1154351606 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
20 Hb_152910_050 0.1181440449 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000586_110 Hb_000586_110 Hb_026218_010 Hb_026218_010 Hb_000586_110--Hb_026218_010 Hb_005731_040 Hb_005731_040 Hb_000586_110--Hb_005731_040 Hb_097292_010 Hb_097292_010 Hb_000586_110--Hb_097292_010 Hb_000861_060 Hb_000861_060 Hb_000586_110--Hb_000861_060 Hb_001025_130 Hb_001025_130 Hb_000586_110--Hb_001025_130 Hb_002636_120 Hb_002636_120 Hb_000586_110--Hb_002636_120 Hb_026218_010--Hb_005731_040 Hb_026218_010--Hb_002636_120 Hb_026218_010--Hb_001025_130 Hb_001775_140 Hb_001775_140 Hb_026218_010--Hb_001775_140 Hb_001709_120 Hb_001709_120 Hb_026218_010--Hb_001709_120 Hb_005731_040--Hb_097292_010 Hb_003598_020 Hb_003598_020 Hb_005731_040--Hb_003598_020 Hb_007846_030 Hb_007846_030 Hb_005731_040--Hb_007846_030 Hb_005731_040--Hb_000861_060 Hb_097292_010--Hb_007846_030 Hb_097292_010--Hb_000861_060 Hb_007426_190 Hb_007426_190 Hb_097292_010--Hb_007426_190 Hb_000878_080 Hb_000878_080 Hb_097292_010--Hb_000878_080 Hb_000861_060--Hb_007426_190 Hb_000227_300 Hb_000227_300 Hb_000861_060--Hb_000227_300 Hb_000310_040 Hb_000310_040 Hb_000861_060--Hb_000310_040 Hb_001025_130--Hb_001709_120 Hb_015292_020 Hb_015292_020 Hb_001025_130--Hb_015292_020 Hb_006483_070 Hb_006483_070 Hb_001025_130--Hb_006483_070 Hb_002902_060 Hb_002902_060 Hb_001025_130--Hb_002902_060 Hb_162472_010 Hb_162472_010 Hb_001025_130--Hb_162472_010 Hb_011618_110 Hb_011618_110 Hb_002636_120--Hb_011618_110 Hb_001975_110 Hb_001975_110 Hb_002636_120--Hb_001975_110 Hb_011853_020 Hb_011853_020 Hb_002636_120--Hb_011853_020 Hb_000003_370 Hb_000003_370 Hb_002636_120--Hb_000003_370 Hb_096027_010 Hb_096027_010 Hb_002636_120--Hb_096027_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.860176 5.3598 8.09896 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0333859 1.79657

CAGE analysis