Hb_000878_080

Information

Type -
Description -
Location Contig878: 98087-98734
Sequence    

Annotation

kegg
ID rcu:RCOM_0422220
description hypothetical protein
nr
ID XP_012074264.1
description PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08719 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61302: 98157-98243 , PASA_asmbl_61303: 98289-98652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_080 0.0 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
2 Hb_002028_270 0.0753303082 - - Pectinesterase-1 precursor, putative [Ricinus communis]
3 Hb_097292_010 0.0835084647 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
4 Hb_001856_210 0.0853203533 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
5 Hb_002894_060 0.0907612193 - - respiratory burst oxidase D [Manihot esculenta]
6 Hb_002203_010 0.0913310082 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
7 Hb_004005_060 0.0929947475 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
8 Hb_004880_040 0.0954158391 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
9 Hb_011861_130 0.0967426585 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
10 Hb_000359_100 0.0982064549 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000213_020 0.098322745 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001329_050 0.0999644098 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007846_030 0.1020711869 - - Uncharacterized protein TCM_021839 [Theobroma cacao]
14 Hb_005731_040 0.1036621316 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
15 Hb_000445_260 0.104246888 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
16 Hb_001349_050 0.1058433342 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
17 Hb_003464_010 0.106485824 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001007_020 0.1102395269 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
19 Hb_000861_060 0.1112395838 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
20 Hb_001709_090 0.1112462772 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]

Gene co-expression network

sample Hb_000878_080 Hb_000878_080 Hb_002028_270 Hb_002028_270 Hb_000878_080--Hb_002028_270 Hb_097292_010 Hb_097292_010 Hb_000878_080--Hb_097292_010 Hb_001856_210 Hb_001856_210 Hb_000878_080--Hb_001856_210 Hb_002894_060 Hb_002894_060 Hb_000878_080--Hb_002894_060 Hb_002203_010 Hb_002203_010 Hb_000878_080--Hb_002203_010 Hb_004005_060 Hb_004005_060 Hb_000878_080--Hb_004005_060 Hb_001971_040 Hb_001971_040 Hb_002028_270--Hb_001971_040 Hb_006810_040 Hb_006810_040 Hb_002028_270--Hb_006810_040 Hb_000359_100 Hb_000359_100 Hb_002028_270--Hb_000359_100 Hb_002028_270--Hb_004005_060 Hb_000289_020 Hb_000289_020 Hb_002028_270--Hb_000289_020 Hb_007846_030 Hb_007846_030 Hb_097292_010--Hb_007846_030 Hb_005731_040 Hb_005731_040 Hb_097292_010--Hb_005731_040 Hb_000861_060 Hb_000861_060 Hb_097292_010--Hb_000861_060 Hb_000586_110 Hb_000586_110 Hb_097292_010--Hb_000586_110 Hb_007426_190 Hb_007426_190 Hb_097292_010--Hb_007426_190 Hb_000445_260 Hb_000445_260 Hb_001856_210--Hb_000445_260 Hb_174639_010 Hb_174639_010 Hb_001856_210--Hb_174639_010 Hb_010080_050 Hb_010080_050 Hb_001856_210--Hb_010080_050 Hb_004880_040 Hb_004880_040 Hb_001856_210--Hb_004880_040 Hb_009113_020 Hb_009113_020 Hb_001856_210--Hb_009113_020 Hb_001349_050 Hb_001349_050 Hb_002894_060--Hb_001349_050 Hb_001007_020 Hb_001007_020 Hb_002894_060--Hb_001007_020 Hb_000418_110 Hb_000418_110 Hb_002894_060--Hb_000418_110 Hb_019516_010 Hb_019516_010 Hb_002894_060--Hb_019516_010 Hb_000134_130 Hb_000134_130 Hb_002894_060--Hb_000134_130 Hb_001623_250 Hb_001623_250 Hb_002894_060--Hb_001623_250 Hb_000213_020 Hb_000213_020 Hb_002203_010--Hb_000213_020 Hb_002203_010--Hb_000359_100 Hb_002203_010--Hb_001349_050 Hb_002203_010--Hb_004005_060 Hb_002818_060 Hb_002818_060 Hb_002203_010--Hb_002818_060 Hb_004005_060--Hb_000213_020 Hb_004005_060--Hb_000359_100 Hb_000862_050 Hb_000862_050 Hb_004005_060--Hb_000862_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.48915 5.17779 5.7225 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.17378 0.833129

CAGE analysis