Hb_000862_050

Information

Type transcription factor
Description TF Family: GRAS
Location Contig862: 54420-56417
Sequence    

Annotation

kegg
ID rcu:RCOM_1684380
description DELLA protein RGL1, putative
nr
ID XP_002509714.1
description DELLA protein RGL1, putative [Ricinus communis]
swissprot
ID Q9CAN3
description Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=1 SV=1
trembl
ID B9RC30
description DELLA protein RGL1, putative OS=Ricinus communis GN=RCOM_1684380 PE=4 SV=1
Gene Ontology
ID GO:0003700
description scarecrow-like protein 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000862_050 0.0 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
2 Hb_008725_100 0.077251909 - - PREDICTED: histone H1-like [Jatropha curcas]
3 Hb_000592_100 0.085405206 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
4 Hb_004005_060 0.0913532918 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
5 Hb_006120_130 0.0992095283 - - -
6 Hb_006810_040 0.1009510711 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
7 Hb_007126_010 0.103198239 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
8 Hb_001159_090 0.1104890821 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
9 Hb_000375_260 0.1108384924 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
10 Hb_000996_040 0.1117578825 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
11 Hb_000576_140 0.1118753618 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
12 Hb_000878_120 0.1120374025 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
13 Hb_000317_120 0.1129252065 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
14 Hb_002028_270 0.1132142333 - - Pectinesterase-1 precursor, putative [Ricinus communis]
15 Hb_000213_020 0.1200662615 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001085_160 0.1221284941 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
17 Hb_159809_040 0.1222744676 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000522_160 0.1223487007 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
19 Hb_000359_100 0.122872374 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000024_150 0.1230289123 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]

Gene co-expression network

sample Hb_000862_050 Hb_000862_050 Hb_008725_100 Hb_008725_100 Hb_000862_050--Hb_008725_100 Hb_000592_100 Hb_000592_100 Hb_000862_050--Hb_000592_100 Hb_004005_060 Hb_004005_060 Hb_000862_050--Hb_004005_060 Hb_006120_130 Hb_006120_130 Hb_000862_050--Hb_006120_130 Hb_006810_040 Hb_006810_040 Hb_000862_050--Hb_006810_040 Hb_007126_010 Hb_007126_010 Hb_000862_050--Hb_007126_010 Hb_008725_100--Hb_000592_100 Hb_000098_270 Hb_000098_270 Hb_008725_100--Hb_000098_270 Hb_008725_100--Hb_006120_130 Hb_000010_440 Hb_000010_440 Hb_008725_100--Hb_000010_440 Hb_008725_100--Hb_007126_010 Hb_000024_150 Hb_000024_150 Hb_000592_100--Hb_000024_150 Hb_024682_030 Hb_024682_030 Hb_000592_100--Hb_024682_030 Hb_000592_100--Hb_000010_440 Hb_010672_010 Hb_010672_010 Hb_000592_100--Hb_010672_010 Hb_000213_020 Hb_000213_020 Hb_004005_060--Hb_000213_020 Hb_002203_010 Hb_002203_010 Hb_004005_060--Hb_002203_010 Hb_000359_100 Hb_000359_100 Hb_004005_060--Hb_000359_100 Hb_002028_270 Hb_002028_270 Hb_004005_060--Hb_002028_270 Hb_000878_080 Hb_000878_080 Hb_004005_060--Hb_000878_080 Hb_000289_020 Hb_000289_020 Hb_006120_130--Hb_000289_020 Hb_000375_260 Hb_000375_260 Hb_006120_130--Hb_000375_260 Hb_043552_010 Hb_043552_010 Hb_006120_130--Hb_043552_010 Hb_006120_130--Hb_002028_270 Hb_001971_040 Hb_001971_040 Hb_006810_040--Hb_001971_040 Hb_000522_160 Hb_000522_160 Hb_006810_040--Hb_000522_160 Hb_006810_040--Hb_002028_270 Hb_159809_040 Hb_159809_040 Hb_006810_040--Hb_159809_040 Hb_089140_070 Hb_089140_070 Hb_006810_040--Hb_089140_070 Hb_005332_030 Hb_005332_030 Hb_006810_040--Hb_005332_030 Hb_007126_010--Hb_006810_040 Hb_001348_100 Hb_001348_100 Hb_007126_010--Hb_001348_100 Hb_007126_010--Hb_000592_100 Hb_007126_010--Hb_159809_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0596473 1.42221 8.48215 6.66858 0.0186132 0.00869999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.28721 1.08949

CAGE analysis