Hb_008725_100

Information

Type -
Description -
Location Contig8725: 69776-70405
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20090g
description POPTRDRAFT_552493; hypothetical protein
nr
ID XP_012082844.1
description PREDICTED: histone H1-like [Jatropha curcas]
swissprot
ID P23444
description Histone H1 OS=Zea mays PE=2 SV=2
trembl
ID A0A067JWA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13987 PE=3 SV=1
Gene Ontology
ID GO:0005694
description histone h1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_100 0.0 - - PREDICTED: histone H1-like [Jatropha curcas]
2 Hb_000862_050 0.077251909 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
3 Hb_000592_100 0.0784187023 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
4 Hb_000098_270 0.101360977 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
5 Hb_006120_130 0.1060876903 - - -
6 Hb_000010_440 0.1086512587 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
7 Hb_007126_010 0.1107171133 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
8 Hb_000878_120 0.1121048223 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
9 Hb_000152_590 0.1161301006 - - PREDICTED: 21 kDa protein [Jatropha curcas]
10 Hb_006351_030 0.1163373769 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
11 Hb_010672_010 0.1163516437 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
12 Hb_000024_150 0.1173850222 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
13 Hb_006916_120 0.1216205217 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
14 Hb_133508_020 0.1221654277 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
15 Hb_000996_040 0.1258509668 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
16 Hb_001782_100 0.1305725786 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_024682_030 0.1307139949 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
18 Hb_003055_080 0.1334630798 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
19 Hb_006810_040 0.1361945945 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
20 Hb_000375_260 0.1379575177 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]

Gene co-expression network

sample Hb_008725_100 Hb_008725_100 Hb_000862_050 Hb_000862_050 Hb_008725_100--Hb_000862_050 Hb_000592_100 Hb_000592_100 Hb_008725_100--Hb_000592_100 Hb_000098_270 Hb_000098_270 Hb_008725_100--Hb_000098_270 Hb_006120_130 Hb_006120_130 Hb_008725_100--Hb_006120_130 Hb_000010_440 Hb_000010_440 Hb_008725_100--Hb_000010_440 Hb_007126_010 Hb_007126_010 Hb_008725_100--Hb_007126_010 Hb_000862_050--Hb_000592_100 Hb_004005_060 Hb_004005_060 Hb_000862_050--Hb_004005_060 Hb_000862_050--Hb_006120_130 Hb_006810_040 Hb_006810_040 Hb_000862_050--Hb_006810_040 Hb_000862_050--Hb_007126_010 Hb_000024_150 Hb_000024_150 Hb_000592_100--Hb_000024_150 Hb_024682_030 Hb_024682_030 Hb_000592_100--Hb_024682_030 Hb_000592_100--Hb_000010_440 Hb_010672_010 Hb_010672_010 Hb_000592_100--Hb_010672_010 Hb_006351_030 Hb_006351_030 Hb_000098_270--Hb_006351_030 Hb_000289_020 Hb_000289_020 Hb_000098_270--Hb_000289_020 Hb_000098_270--Hb_006810_040 Hb_000098_270--Hb_010672_010 Hb_043552_010 Hb_043552_010 Hb_000098_270--Hb_043552_010 Hb_006120_130--Hb_000289_020 Hb_000375_260 Hb_000375_260 Hb_006120_130--Hb_000375_260 Hb_006120_130--Hb_043552_010 Hb_002028_270 Hb_002028_270 Hb_006120_130--Hb_002028_270 Hb_000010_440--Hb_000024_150 Hb_000365_430 Hb_000365_430 Hb_000010_440--Hb_000365_430 Hb_001638_150 Hb_001638_150 Hb_000010_440--Hb_001638_150 Hb_000411_020 Hb_000411_020 Hb_000010_440--Hb_000411_020 Hb_007126_010--Hb_006810_040 Hb_001348_100 Hb_001348_100 Hb_007126_010--Hb_001348_100 Hb_007126_010--Hb_000592_100 Hb_159809_040 Hb_159809_040 Hb_007126_010--Hb_159809_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.155195 1.96879 8.54383 7.82221 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.11731 0.89893

CAGE analysis