Hb_159809_040

Information

Type -
Description -
Location Contig159809: 51975-56466
Sequence    

Annotation

kegg
ID rcu:RCOM_0937670
description hypothetical protein
nr
ID XP_002519088.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93VG8
description DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1
trembl
ID B9RZB9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0937670 PE=4 SV=1
Gene Ontology
ID GO:0046872
description desi-like protein at4g17486

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14241: 51975-56792 , PASA_asmbl_14243: 54922-56770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159809_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005332_030 0.0738846907 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006810_040 0.0790428468 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_000187_050 0.0812102606 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
5 Hb_000345_230 0.0817243841 - - -
6 Hb_000522_160 0.0884168427 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
7 Hb_000977_190 0.0902582883 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001348_100 0.091304521 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
9 Hb_001263_030 0.1000691779 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
10 Hb_003656_080 0.1023875969 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
11 Hb_001971_040 0.1041103684 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
12 Hb_000538_290 0.1049540943 - - hypothetical protein RCOM_0303940 [Ricinus communis]
13 Hb_007126_010 0.110883882 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
14 Hb_000359_100 0.1110459011 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000592_100 0.1120992894 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
16 Hb_002686_320 0.1129119515 - - syntaxin, putative [Ricinus communis]
17 Hb_006693_010 0.1130444791 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
18 Hb_003106_090 0.1154660924 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
19 Hb_000576_140 0.1174329223 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
20 Hb_004531_060 0.1185997092 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_159809_040 Hb_159809_040 Hb_005332_030 Hb_005332_030 Hb_159809_040--Hb_005332_030 Hb_006810_040 Hb_006810_040 Hb_159809_040--Hb_006810_040 Hb_000187_050 Hb_000187_050 Hb_159809_040--Hb_000187_050 Hb_000345_230 Hb_000345_230 Hb_159809_040--Hb_000345_230 Hb_000522_160 Hb_000522_160 Hb_159809_040--Hb_000522_160 Hb_000977_190 Hb_000977_190 Hb_159809_040--Hb_000977_190 Hb_005332_030--Hb_000977_190 Hb_005332_030--Hb_000522_160 Hb_003656_080 Hb_003656_080 Hb_005332_030--Hb_003656_080 Hb_005332_030--Hb_006810_040 Hb_001263_030 Hb_001263_030 Hb_005332_030--Hb_001263_030 Hb_001971_040 Hb_001971_040 Hb_006810_040--Hb_001971_040 Hb_006810_040--Hb_000522_160 Hb_002028_270 Hb_002028_270 Hb_006810_040--Hb_002028_270 Hb_089140_070 Hb_089140_070 Hb_006810_040--Hb_089140_070 Hb_002686_320 Hb_002686_320 Hb_000187_050--Hb_002686_320 Hb_011501_010 Hb_011501_010 Hb_000187_050--Hb_011501_010 Hb_000538_290 Hb_000538_290 Hb_000187_050--Hb_000538_290 Hb_000187_050--Hb_000977_190 Hb_009113_020 Hb_009113_020 Hb_000187_050--Hb_009113_020 Hb_003935_040 Hb_003935_040 Hb_000345_230--Hb_003935_040 Hb_009252_080 Hb_009252_080 Hb_000345_230--Hb_009252_080 Hb_001141_440 Hb_001141_440 Hb_000345_230--Hb_001141_440 Hb_001709_090 Hb_001709_090 Hb_000345_230--Hb_001709_090 Hb_000345_230--Hb_000522_160 Hb_006693_010 Hb_006693_010 Hb_000522_160--Hb_006693_010 Hb_000522_160--Hb_001971_040 Hb_001348_100 Hb_001348_100 Hb_000522_160--Hb_001348_100 Hb_000977_190--Hb_002686_320 Hb_000977_190--Hb_000538_290 Hb_000140_200 Hb_000140_200 Hb_000977_190--Hb_000140_200 Hb_020025_030 Hb_020025_030 Hb_000977_190--Hb_020025_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.501669 7.95292 7.46279 0 0.0958387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.70295 1.285

CAGE analysis